Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04923 ATGTTGGGTAATAACTGTGAGAAAACGGTTCTCATCTCTCCAACGTATAACAAATGGACACAGATAGATGATCAAAACGTCTCAATGGCTTCTTCCTCTGTTAAGGTAATGGAAAAACCAAATCAAGAGCTTCTTCAGCAACAACAACAAGCACTTAGGTGCCCTCGTTGTGACTCATCAAACACCAAATTCTGCTACTACAACAACTACAGCTTGTCACAACCAAGGCACTTTTGCAAAGCTTGTAAGAGATATTGGACAAGAGGTGGAACTTTGAGGAATGTTCCTGTTGGTGGTGGATGCAGAAAAAACAAGCGTGTCAAGAGACCAATAACAACCTCTTCTTCTTCAACCACTGATCTTGTTTCTTCTGTTTCTACTACTACTAATGTTTCTCCTTCTTCTTCTTCCACTCCTAGTGCCAATTCTCAACCCTCTTCCACTACCTCAAATCAAATCAACCCTTTGTTTTATGGGTTACCAGGTTCTGGTGGTAATTCCTCTGATGTGATGAATCTTCAGTTTCCAAGGTTCAATTCTAGGGTCTATGATCTTCAACCTCATATGAATGCCCTTGGATTGGGATTTTCTTCAGGGGTTTTGTCAAATGAAGTGAGTGATACTATTGGTTATAGAAATGGTGGGTTTAGTAGTTCAAATTCAAATAACAACAACACTAGTTTTGTTTCTAGCTATAATTCCATCTTTGGTGCTTCTTCAACTTCCATGCCTTCAAATCCTGTTATGGCTTCCCTTCTAAGCTCTACTTTACTTCAACAAAAGTTCCTCAATAAAGGTGATCCAGGTAGCAATGCTTTTCATCAGGGGATATTGATGGAAGAGGTGAATCATGGCAGTGAAAGAGAGATAGTGGCTTTAAAAGATGTGAAAGTTGAAGGACAGAACAGGTTGGAGTGGAATAATAGTAATAATAATGGTGGTGGTGCTTGTCAAAACCAGATGGAGCATATGGGGTTGTTGTCTGATCCTTCACTTTATTGGAATAACACAGCAGCAACAACAGGTTTGGGTGGTGCTTGGAGTGATCAACCTAATAATATTGGTCCTTCTTCAGTCACACCTCTGATCTAG 1092 0.3993 MLGNNCEKTVLISPTYNKWTQIDDQNVSMASSSVKVMEKPNQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPITTSSSSTTDLVSSVSTTTNVSPSSSSTPSANSQPSSTTSNQINPLFYGLPGSGGNSSDVMNLQFPRFNSRVYDLQPHMNALGLGFSSGVLSNEVSDTIGYRNGGFSSSNSNNNNTSFVSSYNSIFGASSTSMPSNPVMASLLSSTLLQQKFLNKGDPGSNAFHQGILMEEVNHGSEREIVALKDVKVEGQNRLEWNNSNNNGGGACQNQMEHMGLLSDPSLYWNNTAATTGLGGAWSDQPNNIGPSSVTPLI. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04923 363 MobiDBLite consensus disorder prediction 97 158 - -
Seca11g04923 363 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Seca11g04923 363 MobiDBLite consensus disorder prediction 110 157 - -
Seca11g04923 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 230 IPR045174 GO:0003700|GO:0006355
Seca11g04923 363 Pfam Dof domain, zinc finger 50 106 IPR003851 GO:0003677|GO:0006355
Seca11g04923 363 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04923 Seca-Chr11 140392073 140393596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04923 1 363 C2C2-Dof Transcription Factor Family AT1G28310 35.641 1.80e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g04923 zf-Dof 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04923 - - gmx:778105 337.035