Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04922 ATGGACAGAAGCAGGTCAGAGGGAAAGAGGACCATGAGGTACAAAGAGGAGGTGGATGATGAGGAAGAAGAGGAAGAGGAAGAGGTGAGTGACATGGGATTTGGAGAAGATGGTAGAAGGAAAAGAGTAATGACAGATCTCTATAGCAAAAGAGGGTCCAAAAGTGGAGGGTCTGCAGTGCCACCTGCTTGTCAAGTGGATAATTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACCGAAGACATAAGGTCTGTGAGTACCATGCCAAAGCTCCTGCCGTACACATTGCAGGGCTTCAGCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGATCTATCCGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGATTGGCCGGGCATAATGAGAGGCGTCGCAAAAATGCTAGTGATTATCATGGAGAATGA 438 0.4612 MDRSRSEGKRTMRYKEEVDDEEEEEEEEVSDMGFGEDGRRKRVMTDLYSKRGSKSGGSAVPPACQVDNCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGLQQRFCQQCSRFHDLSEFDDSKRSCRRRLAGHNERRRKNASDYHGE. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04922 145 FunFam Squamosa promoter-binding-like protein 14 55 125 - -
Seca11g04922 145 SUPERFAMILY SBT domain 62 142 IPR036893 GO:0003677|GO:0005634
Seca11g04922 145 ProSiteProfiles Zinc finger SBP-type profile. 61 138 IPR004333 GO:0003677
Seca11g04922 145 MobiDBLite consensus disorder prediction 1 17 - -
Seca11g04922 145 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 139 IPR044817 GO:0003677
Seca11g04922 145 Gene3D - 54 125 IPR036893 GO:0003677|GO:0005634
Seca11g04922 145 MobiDBLite consensus disorder prediction 18 32 - -
Seca11g04922 145 MobiDBLite consensus disorder prediction 1 41 - -
Seca11g04922 145 PIRSF SBP 1 145 IPR017238 GO:0003677|GO:0003700|GO:0009908
Seca11g04922 145 Pfam SBP domain 64 137 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04922 Seca-Chr11 140218305 140219916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04922 54 141 SBP-box Gene Family AT2G33810 69.318 2.21e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca11g04922 SBP 5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04922 - - gmx:100527199 222.246