Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04920 ATGCCAGTACAGAAGCGTTCTCATGAGGCTCTTGAAGAGGAGGATGTTGAGATGAACAATCTTGAGCAACCAGAAGATGAAGTCGTATCCGATCGAAGCCATTCATCGAGCAACGAGGACAAGGAACAATATGTGCTTATAAAATTGTCAGATGTATGCAACGAAGTTCAATGTCCTATCTGCCTAGGCGTCATTCGAAAAACAAGAACTGTAGTGGAATGCCTGCATCGCTTTTGCAAAGAGTGCATAGACAAATTCATGCGCCTTGGTAACAATGAATGCCCTACTTGCCGTGCACATTGTGCTAGCCAACGCTCACTGAGAGATGACCCAAACTATGATGCCTTGATTGCTTCTATCTATCCAAATATTGACAAGTATGAAGAGGAGAAGATCCAAGCTTCCATCTTCAATACTCTACAGCGAAAAACAGAAATGATCATAGAAATCACGCGTGCATCTGGTATACTTTCTTGGGAAAAAAAATTTCACCGGAGTCACGACCGAGTCAAGGGTAAGAATTCCAAAAATAGTCGCATCTCCAAATTGGTTGATCACCTTGGTAGCTCGGCGATCGATGATGATGAGATGTCTGCCTTTATCTTGCTTGTCTCTTTGGATGAGCAAGGAATGCCAAGGTTGCTGCAGCCATACCTTAGCTGCAAGCCTACTTTGATGGTCAAGAACCTGTGCCAGTATGTTGCACTTAAAGCTGGGTTGCAGGCAAATGAAGTTGAATTATGCTTGGTAATAAAGCCGCAAGCCAGTCTTGTAAGTGGTGAAAGTACCGTTGATCCAGACAAAGATAAGTTACATGTTGTAGGAGACCAAGAAACTTTGGCTGAACTGGGAACTTATGATAATACCACCCATGGCTATCTGGTAAATTCTCAAAGTTCATTACGTGTGTATACTGTGTACATAAATATGTATTAA 936 0.4231 MPVQKRSHEALEEEDVEMNNLEQPEDEVVSDRSHSSSNEDKEQYVLIKLSDVCNEVQCPICLGVIRKTRTVVECLHRFCKECIDKFMRLGNNECPTCRAHCASQRSLRDDPNYDALIASIYPNIDKYEEEKIQASIFNTLQRKTEMIIEITRASGILSWEKKFHRSHDRVKGKNSKNSRISKLVDHLGSSAIDDDEMSAFILLVSLDEQGMPRLLQPYLSCKPTLMVKNLCQYVALKAGLQANEVELCLVIKPQASLVSGESTVDPDKDKLHVVGDQETLAELGTYDNTTHGYLVNSQSSLRVYTVYINMY. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04920 311 MobiDBLite consensus disorder prediction 1 37 - -
Seca11g04920 311 Pfam Zinc finger, C3HC4 type (RING finger) 57 97 - -
Seca11g04920 311 SUPERFAMILY RING/U-box 44 113 - -
Seca11g04920 311 CDD RING-HC_RING1-like 55 120 - -
Seca11g04920 311 PANTHER OS11G0578200 PROTEIN 13 141 IPR044592 -
Seca11g04920 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 127 IPR013083 -
Seca11g04920 311 ProSitePatterns Zinc finger RING-type signature. 74 83 IPR017907 -
Seca11g04920 311 SMART ring_2 58 97 IPR001841 -
Seca11g04920 311 ProSiteProfiles Zinc finger RING-type profile. 58 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04920 Seca-Chr11 140123016 140127590 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04920 56 121 C3H Transcription Factor Family AT3G23060 36.232 3.74e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04920 K10695 - zju:107425269 218.009