Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04889 ATGGGTTCCGACAATGGCTACAAAGCAAGAGAGCTGTTTCAAGCTCAGGCTCACTTGTATGATCACATCCTTAGCTTCCTTAAACCCATGTCCATCAAATGGGCAGTTGATCTTGACATACCAAATATCATCAACAATCATGCCCAACCCATTACTCTGCCCCAATTGGTCTCTGCTCTTCAAATTCCACAAACAAAGGCTGAGCTTGTTCAACACCTTATGCGTTTATTGGTACACAATAACTTCTTTACAATTATCAAAATCGATGACAACAACGAAGCATATGCTCTCACTCCAACTTCAGAGCTCCTTGTCAAAGGCACTAACCATTGTTTATCTTCAATGGTTAAATTGCTAACCAACCCAGCTTCCGTTGATTTATATAATCATTTAGCTAAGTGGACTACAGGGGAGGGGCAAACAATCTATGAGACCGCATTAGGCCAAGGAGACTTTTGGAGTTTTGTTCATCAAGATCCCGCGCACTTGAAGTCCTTCAATGAGGCCATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGGAGGCCTCAATTCCTTAGTTGATGTTGGTGGTGGAACTGGAAACACAGCTAAAATTATTTGTGAGGCATTTCCTATGTTAAAGTGTACAGTGTTGGACCTTCCACAAGTGGTTAAAGGTTTAACAGGAAGCAACAATTTGAGTTATGTTGGTGGTGATATGTTTAAATCTATCCCTCAGGCAGATGCAATTTTACTCAAGTGGATTTTACATGACTGGAGTGATGATGATTGTGTAAAGATACTTAAAAATTGTAAAGAAGTTGTTTCAAGCAACGCAAAAGGAGGAAAAGTGATCATAATAGATATTGTGATAAACGAAAAGCAAGACGAAAAGCAAGATGAGCATGAAATGACCGAAGTCAAGCTCTTCTTTGATATACTTATGATGGCAACTTTCAATGCAAAGGAAAGAGACGAAAAAAATTGGAAGCAACTCTTTGCAGAAGCTGGCTTCACACATTATAAAATATTTCCCATATTTGGTTTTAGATCACTTATTGAGCTTTATCCTTAA 1080 0.388 MGSDNGYKARELFQAQAHLYDHILSFLKPMSIKWAVDLDIPNIINNHAQPITLPQLVSALQIPQTKAELVQHLMRLLVHNNFFTIIKIDDNNEAYALTPTSELLVKGTNHCLSSMVKLLTNPASVDLYNHLAKWTTGEGQTIYETALGQGDFWSFVHQDPAHLKSFNEAMESDSHVVRLALRDCKSVFGGLNSLVDVGGGTGNTAKIICEAFPMLKCTVLDLPQVVKGLTGSNNLSYVGGDMFKSIPQADAILLKWILHDWSDDDCVKILKNCKEVVSSNAKGGKVIIIDIVINEKQDEKQDEHEMTEVKLFFDILMMATFNAKERDEKNWKQLFAEAGFTHYKIFPIFGFRSLIELYP. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04889 359 PIRSF O-mtase 2 359 IPR016461 GO:0008168
Seca11g04889 359 PANTHER O-METHYLTRANSFERASE 11 344 IPR016461 GO:0008168
Seca11g04889 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 359 IPR016461 GO:0008168
Seca11g04889 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 357 IPR029063 -
Seca11g04889 359 Gene3D Vaccinia Virus protein VP39 105 359 IPR029063 -
Seca11g04889 359 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Seca11g04889 359 Gene3D - 2 104 IPR036388 -
Seca11g04889 359 Pfam O-methyltransferase domain 128 340 IPR001077 GO:0008171
Seca11g04889 359 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Seca11g04889 359 FunFam Coniferyl alcohol 9-O-methyltransferase 3 104 - -
Seca11g04889 359 FunFam O-methyltransferase ZRP4 106 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04889 Seca-Chr11 139094903 139103553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04889 29 357 Monolignol Biosynthesis Gene Families AT5G54160 33.041 1.23e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04889 K22588 K13262 gmx:100818947 416.387