Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04858 ATGGAGAGCGAGGCCGGTTCGGAGGGAGACAGTCATCGGAAAAGTGGTGGTGCAGATGATGACAGCAATGAGAACAACCAGAACCAGAACCACAACAACGATGGAAGCAATAGTAAGATTTCGAATTCCAATGAGGGGAATAGCAAGCCCAAGCGCCAGATGAAGACACCCTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCCTTGGATAATTACCCTTCAGAGGCTATGAGGGCGGACCTGTCGCAGAAGTTGGGGTTGTCAGATCGGCAGCTGCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGCCGTCCAAGAAGCCGCTGCCGCCACGGAAGGCGGTGGCGGAACCATTGCCGGATTCCCCCACAGATGACCTCAGGTTGGGACCTGAACTTGGTAATGAGTATGGGTCGGGTTCTAGGTCGGGTTCAAGTCCATTTACCCGTCCGGAGCACCGGAATGCAGTGCCGCGGGGTGTGCCTGCTTATTATGAGTCCCCGCAGGCTGTAATGGAGCTTAGAGCAATTGCTTGTGTGGAGTTACAGTTGGGGGAGCCATTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGATCCATTGCCACCTGATGCATTTGGGGCACCTATAGCGGTTACAGAACACCAGAAGCGACCTAGTCTTGCCTATGACAGTAAAATATATGAAAGACATGATGTTAAAAAAAATAAGGCTATGGCAAGGACATTCCATGAATATCAATTTCTACCGAATCAGTCTGGTGTTAGGTCTGATGCATTTGGACAGTTCAGCCAATCTCATTTACATGATCCAATGGAGAGTCCTGCCAGAAATCCCCCTTTTGCGCATGGACATGAACAACTGCCCAGAATTCATGCCACCCAAGGTCATTCTTCTCATGTTCGTTTGTCTCAGCAAGACAAGCATGGGAATTCCTATCAATCTCCTCCTCATGATGATAATGTCATCCCCCAAAGGGAACTGTGCCCAAAAGTTGAAATGAACTCTCACTTAACTGATCGCGAAATTGTTGGGCCAGAAAATTCTTATGCTTTACCTAGTGGACAAGTTTTACATAACAATGCAATGCGAATCGAGAGGAAACGAAAGAGTGATGATGCCAGAATTGCAAAGGAAGTTGAAGCCCATGAGATGAAAATCCGGAAAGAGCTTGAGAAACAAGACAACCTTAGACGAAAGAATGAGGAGCGAATAAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAGGAAAGAAGAAGAGAGGTTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAGACGAGAGCAAAAACGTGAAATCGAACGTAGGGAAAGGTTTTTGCTGAAAGAAAATTTAAAAGCTGAGAAAATGCGGCGAAAAGAAGAGCTTCGCAAAGAGAAAGAGGAAGAGCGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATAGCTAAGGAATCTTTGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATTCATCTTAATTTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCTAAGAGTGTAAAGCTAAGAAAACCATTTGCTATTGAACCCTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGATTTTTAATTACCTTTGCTGATATTCTGGAATTATGGCCTTTTACTCTTGATGAGTTTGTGCAAGCATTTCACGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACGCCTAGTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCCGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGAAATTGGCATAAGCACTTAAATCAGTTGACATGGCCAGAAATTTTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTAAAGAAAAGAAGTATTACAATCTCATATGCAAATGATAAAGATGAGGGAAGAAATTGTGAAGATATTATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAAGGCAGTGGCAAAAATGCAGGAGAGAGGTCTATTAGCACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCACTTGAGGGTAGCGAGGGATTGACTGTGCTAGAGCTTGCAGAAAAAATCCAGAAATCTGGTCTTCGGGATTTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATACCAAACTTTTTGAAAGAATAGCTCCATCAACTTATCGTGTGCGTGCTGCATTTAGGAAGGATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAAATATTTGAAAATGGATTTCTAGCTGGGGAAGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGTTGATGATTTGGTAAATCCTTCAAGTGCTAACAAAACATCTGATCAGTGTGATGATTTGTCATTAAATGGAAAAGAAAATTTGGGTCATGATGTAGAACTTAAAGATAAGTTTGATAAGGATTTGCCTTGTTTTCCTGAGGATGGTTCCAAGAATGCTGATTGTCTGAGTGCTGTCACTGGACAACCTGTTGCTTGTGGAGATCTGAATGCTGAAAATCTTGGTGAAGATATGGAAATTGATGAAAGCAAATCTGGAGAGTCATGGGTTCAAGGGCTTACAGAAGGAGAATATTCCGATCTCAGTGTGGAGGAGCGTTTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAGTTCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAACTGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTTCGAAAGATGATAATTTTAATAAATCAGATTTTCCATCTGTCAATGGGAATAAGGTTGAAACACAAAACACATGTGCTGGTGTGGAAGGTAACCAAAGGCCATTGCTTGACATTAATATTTGCAATAATAATGAGGCATCTCCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAAAGCCTGCCTATTGAAAAGTCATCATCGGTTCAAGATCTCTGCATAGGTCCAGATAACCCCCAGGCTTTGCAATGCGCACAATATTCAAAAAGGTCACGATCTCAATTGAAATCTTATATTTCCCACATAGCAGAGGAGATGTATGTCTACAGATCATTACCCCTTGGGCAAGACCGCAGACATAATAGATACTGGCAATTTGTTGCATCAGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCATGATGGCAAGTGGAGGCTTATTGATTCTGTGGAGGCCTTTGATGCACTAATGAATTCACTGGATTCACGTGGGGTCAGGGAATCTCATTTGCGCCTAATGTTGCTAAAGATTGAAAACTCCTTTAAGGAAAATGTTCGAAAGAATACACGATGTGCCAAAGCTGGAAACAGAGGTGAAACTTGCATTAAAAATGAAGCTGATGAAACAGATTCCAGTCCTGATCACCATACTGGATCTAATAGTACTAGCAGTACTCTGTGTGGTTTGAACTCTGATACTTCAGAAACTTCAACATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGTGACAAGAAAGCTGCCTTGAGAATGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGCTATAACTCATCAATATTATGTGCAATGAAATATGGGAAGAAGAGATGCAAACCATTGGTTGAGATCTGTGATATCTGTCACAACCCCTATTTCTTTGAAGACTCCCATTGCAGTTTTTGCCACCGTACTTTCCCCTCAAATGATGGATTTAATTTTTCTAAACATGCATTCCAATGTGGAGACAAGTTACCCAAAGATGTTTGTATTTTGGATTCTTCTCTTCCCTTGAGGACAAGATTGCTTAAGGCCCTTCTGGCTTTTATTGAGGCATCTGTTCCACCTGAAGCATTTCAATCACTATGGACAAAAGATATTAGGAGACACTGGGGTGTAAAGATGAGCAAATCATCTTCGGTTGAGGATCTTCTACAGATATTGACCCTATTTGAGAGAGCATTAAAGCGAAAATTTTTATCATCGACATTCGCCACAACAGGCGAGTTGTTGGGATTGAGCACTATGTCAGAGAGTGCTGCTCGTGCTTCTATTGCTTCTGAACCAGTTGCTGTACTTCCATGGGTTCCACGGACCACTCCAGCTGTGTGTCTCAGACTTTTTGAGTTTGATGCATCCATTATGTATGTAGAGAAACCTGAGCCTCGTGAGGAGAAAGAAGCTAGAGAATTCGTAAAGCTTCCTTCAAGATATAGTCCCCTCAAACCTAGTAAGGTGGTTGAACCAGCAAACTTGGACCATGGTGAATTCTTGAAAGTTAAATCTGCTCCTATGAAAATTGTGCGAAGCAGCAATAGACGGGGACTAGTGAGTCATGATAAAGCACGGGGTAAAAAGCTAACTAAAAGAGTGCTTGATTCCAAACGAGATACAAGCCGCCGCAATGTTAAGGTCATCGGGAATCCAAGTCAAAGAATAAAACAGCAGCAAGGGCGAAGATCACAAGGACAAGCCGGTGGACGTGGTCGCCGAACAGTCAGGAAAAGAAGAGTGGAGAAGAGGGCTGTTGAAGATTTGTTGCTTGGCCATAGGGTTCCCACTCATAACTCCAATATTGGTAGAGAATCATTGAGAATATTGGATGAGGACTCTGATGATGAAAAGGCAAGTCCCATGACTCCCATCCACAGGGGGTCTGCTGCTGACATTAGTAACAGTGCTGAAGAGGCTGAATCTGATGACAATGCTCAAGCAATGGAATCTGATGACAATGTTCAAGCAGTGGAATCTGATGACAATGTCCAAGCAGAGGAATCTGATGACAATGACCAAGCAGTGGAATCTGATGACAATGACCAAGCAGTGGAATCTGATGACAATGTCCCAGCAGTAGAGTATGATCAAGGAAACTGGGAGATAGGTTATAATGGTGTCCCAAACAGATGGAGTAGGGATTTGGTTGGAATGAGTGATGAAGATGTGGAAGCTTCTGAAGAAGACAATGACAATGGCATTGAAGAAAATGAAGAGGAAGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCAAATAGAGTTGAAAATGATGAAAGCTCAGACTCGGATGGCTCTGAAGATTCTTCTGTTTAG 5397 0.428 MESEAGSEGDSHRKSGGADDDSNENNQNQNHNNDGSNSKISNSNEGNSKPKRQMKTPFQLETLEKAYALDNYPSEAMRADLSQKLGLSDRQLQMWFCHRRLKDKKDLPSKKPLPPRKAVAEPLPDSPTDDLRLGPELGNEYGSGSRSGSSPFTRPEHRNAVPRGVPAYYESPQAVMELRAIACVELQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEHQKRPSLAYDSKIYERHDVKKNKAMARTFHEYQFLPNQSGVRSDAFGQFSQSHLHDPMESPARNPPFAHGHEQLPRIHATQGHSSHVRLSQQDKHGNSYQSPPHDDNVIPQRELCPKVEMNSHLTDREIVGPENSYALPSGQVLHNNAMRIERKRKSDDARIAKEVEAHEMKIRKELEKQDNLRRKNEERIRKEMERQDRERRKEEERLMRERQREEERTRREQKREIERRERFLLKENLKAEKMRRKEELRKEKEEERRKAALEKATARRIAKESLELIEDEQLEMMELAASSKGFSSIIHLNFDTLQNLESFRDSLCVFPPKSVKLRKPFAIEPWINSEENVGNLLMVWRFLITFADILELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQLKKRSITISYANDKDEGRNCEDIISTLRNGSAAEKAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRAAFRKDPADAESILSEARKKIQIFENGFLAGEDADDVEREESESDEVDEDPEVDDLVNPSSANKTSDQCDDLSLNGKENLGHDVELKDKFDKDLPCFPEDGSKNADCLSAVTGQPVACGDLNAENLGEDMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVVLVGVANEGNSVRVVLEDRLEAATALKKQMWAEAQIDKVRSKDDNFNKSDFPSVNGNKVETQNTCAGVEGNQRPLLDINICNNNEASPSTAENQKAAPVAQSLPIEKSSSVQDLCIGPDNPQALQCAQYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSVEAFDALMNSLDSRGVRESHLRLMLLKIENSFKENVRKNTRCAKAGNRGETCIKNEADETDSSPDHHTGSNSTSSTLCGLNSDTSETSTSFRIELGKSESDKKAALRMYQDFQKWMWKECYNSSILCAMKYGKKRCKPLVEICDICHNPYFFEDSHCSFCHRTFPSNDGFNFSKHAFQCGDKLPKDVCILDSSLPLRTRLLKALLAFIEASVPPEAFQSLWTKDIRRHWGVKMSKSSSVEDLLQILTLFERALKRKFLSSTFATTGELLGLSTMSESAARASIASEPVAVLPWVPRTTPAVCLRLFEFDASIMYVEKPEPREEKEAREFVKLPSRYSPLKPSKVVEPANLDHGEFLKVKSAPMKIVRSSNRRGLVSHDKARGKKLTKRVLDSKRDTSRRNVKVIGNPSQRIKQQQGRRSQGQAGGRGRRTVRKRRVEKRAVEDLLLGHRVPTHNSNIGRESLRILDEDSDDEKASPMTPIHRGSAADISNSAEEAESDDNAQAMESDDNVQAVESDDNVQAEESDDNDQAVESDDNDQAVESDDNVPAVEYDQGNWEIGYNGVPNRWSRDLVGMSDEDVEASEEDNDNGIEENEEEDSEADVMSEGSDGMANRVENDESSDSDGSEDSSV. 1799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04858 1798 ProSiteProfiles DDT domain profile. 560 619 IPR018501 -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 413 443 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1 59 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1539 1568 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 299 327 - -
Seca11g04858 1798 Pfam HB1, ASXL, restriction endonuclease HTH domain 742 810 IPR007759 GO:0006355
Seca11g04858 1798 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1124 1196 IPR028941 -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1221 1253 - -
Seca11g04858 1798 SUPERFAMILY Homeodomain-like 35 105 IPR009057 -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1234 1253 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 843 864 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 299 324 - -
Seca11g04858 1798 CDD homeodomain 51 105 IPR001356 GO:0003677
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1628 1645 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1686 1709 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 21 55 - -
Seca11g04858 1798 Coils Coil 456 491 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 103 163 - -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1536 1604 - -
Seca11g04858 1798 Pfam DDT domain 561 616 IPR018501 -
Seca11g04858 1798 SMART HOX_1 48 110 IPR001356 GO:0003677
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1745 1771 - -
Seca11g04858 1798 Coils Coil 407 450 - -
Seca11g04858 1798 Gene3D - 32 107 - -
Seca11g04858 1798 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 34 1796 IPR044977 GO:0006357
Seca11g04858 1798 MobiDBLite consensus disorder prediction 841 879 - -
Seca11g04858 1798 Pfam Homeodomain 49 105 IPR001356 GO:0003677
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1569 1589 - -
Seca11g04858 1798 Coils Coil 385 405 - -
Seca11g04858 1798 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 946 989 IPR028942 -
Seca11g04858 1798 MobiDBLite consensus disorder prediction 1619 1798 - -
Seca11g04858 1798 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Seca11g04858 1798 ProSiteProfiles HARE-type HTH domain profile. 742 811 IPR007759 GO:0006355
Seca11g04858 1798 SMART testlast3 560 619 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04858 Seca-Chr11 138605532 138616823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04858 41 1602 Homeobox Transcription Factor Family AT1G28420 50.879 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca11g04858 WSD 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04858 - - gmx:100784945 2520.35