Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04852 ATGTATAGCTTCCTCAACCCCATGTCCATCAAGTGGGCCGTTGACCTTGGCATTCCTGATATCATTCACAATCATGGCCACCCCATTACTCTGCCACAGTTAGTTTCTGCTCTTCACATTCCACAATCTAAAGCTACTTGTGTCCAACGCCTCATGCGTTTATTGGCACACATTGACTTCTTTGCAATTCTCAAAATGGATAATGGCAAAGAGGCTTATGCTCTTACCCCACCATCACAACTTCTTGTCAATGGCACTGATCACTGCCTATCTTCAATGGTTCATTTGTTAAACAGTCCAATTCTTGTTGGTTCATACCATCAATTGGGGAAATGGACTTCTGGGGAGGACCTCACAATTGTTGAGACCGCATTAGGCCCTGGAGGCTATTGGGACTTTGTTCATCAAAATCCCACTCATTTGAAGACTTTCAATGAGGCTATGGAAAGTGATTCTCATTTGGTAAGGTTGGCATTGAGAGATTGTAAATCAGTTTTTGAAGGGCTCAGTTCCTTAGTTGATGTTGGTGGTGGGACTGGAAACACGGCTAAGATCATCTGTGAGGCATTTCCACAGTTAAAATACATTGTGTTGGACCTTCCACAAGTTGTCACAGGCTTAACAGGAAACAACAATTTGAGTTTTGTTGGAGGTGATATGTTTAAATTTATCCCTCAAGCTGATGCTGTTTTACTCAAGTGGGTTTTACACAATTGGAGTGATGATGATTGCATAAAGATTCTCAAAAATTGTAAAGATGCTATCTCAGGCAAAGACAAAGTAGGAAAAGTGATCATCATAGATATAGTGATAAATGAAAAGCTAGATGAGCCGGAAATGACAGAAGTAAAACTTTTTCTTGATGTGGTTATGATGACCAGTCTCAATGGGAAAGAGAGGGATGAAAAAGATTGGAAGCGACTTTTTGTGAAGGCAGGCTTCAAACATTACAAGATATTTCCCACATTTGGCTTTAGGAATGGCTACAAAGCAAGTGAGTTGTTTCAAGCTCAAGCTCACTTGTACAAACACATGTATAGCTTCCTCAATCCCATGTCCATCAAATGGGCTGTTGACCTTGGAATTCCTGATATAATCCACAATCATGGCCAGCCCATTACTCTGTCACAGCTAGTTTCTGCTCTTCATATTCCACAATCTAAAGCTACTCGTGTCCAACGCCTTATGCGCTTATTGGCACACATTGACTTCTTTGCAATTGTCAAAATTGATGATGGCAAAGAGGCTTATGCTCTTACCCCTCCATCACAGCTCCTTGTCAACGGCACTGATCACTGCCTCTCCTCAATGGTTCATTTCTTAAATAGCCCAACTCTTGTTGGTTTATACCATCAATTGGGGAAATGGACTTCTGGGGAGGACCTCACAATTGTTGAGACCGCATTAGGCTCTGGAAGCTATTGGGATTTTGTTCATCAAAATCCCACTCATTTGAAGACTTTCAATGAGGCTATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGAAGGCCTCAATTCCTTAGTTGATGTTGGCGGTGGAACTGGAAACACGGCTAAGATTATCTGTGAGGCATTTCCGCAGTTAAAATACATTGTGTTGGATCTTCCTCAGGTTGTCACAGGCTTAACAGGAAACAACAACTTGAGTTTTGTTGGCGGTGACATGTTTAAATTTGTCCCTCAAGCTGATGCTGTTTTACTCAAGTGGGTGTTACACAATTGGAGTGATGATGATTGCATAAAGATTCTCAAAAATTGTAAAGACGCTATCTCAGGCAACAATAAAGGAGGAAAAGTGATCATTATAGACATTGTGATAGATGAAAAGAGAGATGAGCCTGAAATGACAGAAGTAAAACTTCAGCTTGATGTGGTTATGATGACCAGTCTCAATGGAAAAGAGAGGAATGAAAAAGATTGGAAGCACCTTTTCAAGAAAGCAGGTTTCAAATATTACAAGATATTCCCTACATTTGGTTTCAGGTCTCTTATTGAACTTTATCCTTAA 2034 0.4051 MYSFLNPMSIKWAVDLGIPDIIHNHGHPITLPQLVSALHIPQSKATCVQRLMRLLAHIDFFAILKMDNGKEAYALTPPSQLLVNGTDHCLSSMVHLLNSPILVGSYHQLGKWTSGEDLTIVETALGPGGYWDFVHQNPTHLKTFNEAMESDSHLVRLALRDCKSVFEGLSSLVDVGGGTGNTAKIICEAFPQLKYIVLDLPQVVTGLTGNNNLSFVGGDMFKFIPQADAVLLKWVLHNWSDDDCIKILKNCKDAISGKDKVGKVIIIDIVINEKLDEPEMTEVKLFLDVVMMTSLNGKERDEKDWKRLFVKAGFKHYKIFPTFGFRNGYKASELFQAQAHLYKHMYSFLNPMSIKWAVDLGIPDIIHNHGQPITLSQLVSALHIPQSKATRVQRLMRLLAHIDFFAIVKIDDGKEAYALTPPSQLLVNGTDHCLSSMVHFLNSPTLVGLYHQLGKWTSGEDLTIVETALGSGSYWDFVHQNPTHLKTFNEAMESDSHVVRLALRDCKSVFEGLNSLVDVGGGTGNTAKIICEAFPQLKYIVLDLPQVVTGLTGNNNLSFVGGDMFKFVPQADAVLLKWVLHNWSDDDCIKILKNCKDAISGNNKGGKVIIIDIVIDEKRDEPEMTEVKLQLDVVMMTSLNGKERNEKDWKHLFKKAGFKYYKIFPTFGFRSLIELYP. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04852 677 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 433 675 IPR029063 -
Seca11g04852 677 Pfam Dimerisation domain 8 56 IPR012967 GO:0046983
Seca11g04852 677 Pfam Dimerisation domain 352 400 IPR012967 GO:0046983
Seca11g04852 677 FunFam Coniferyl alcohol 9-O-methyltransferase 325 426 - -
Seca11g04852 677 Pfam O-methyltransferase domain 455 659 IPR001077 GO:0008171
Seca11g04852 677 Pfam O-methyltransferase domain 119 315 IPR001077 GO:0008171
Seca11g04852 677 SUPERFAMILY "Winged helix" DNA-binding domain 332 429 IPR036390 -
Seca11g04852 677 Gene3D Vaccinia Virus protein VP39 84 327 IPR029063 -
Seca11g04852 677 Gene3D Vaccinia Virus protein VP39 428 677 IPR029063 -
Seca11g04852 677 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 326 IPR029063 -
Seca11g04852 677 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 333 IPR016461 GO:0008168
Seca11g04852 677 CDD AdoMet_MTases 516 607 - -
Seca11g04852 677 SUPERFAMILY "Winged helix" DNA-binding domain 1 85 IPR036390 -
Seca11g04852 677 FunFam O-methyltransferase ZRP4 428 677 - -
Seca11g04852 677 Gene3D - 328 426 IPR036388 -
Seca11g04852 677 Gene3D - 1 82 IPR036388 -
Seca11g04852 677 PANTHER O-METHYLTRANSFERASE 333 661 IPR016461 GO:0008168
Seca11g04852 677 CDD AdoMet_MTases 172 271 - -
Seca11g04852 677 FunFam O-methyltransferase ZRP4 84 330 - -
Seca11g04852 677 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 342 677 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04852 Seca-Chr11 138352500 138358986 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04852 351 675 Monolignol Biosynthesis Gene Families AT5G54160 31.454 2.41e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04852 K22588 K13262 gmx:100818947 434.106