Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04850 ATGGCTTCCACTAAAAATGGCTACAAAGCAAGTGAGTTGTTTCAAGCTCAAGCTCACTTGTACAAACACATGTATAGCTTCCTCAATCCCATGTCCATCAAATGGGCTGTTGACCTTGGAATTCCTGATATAATCCACAATCATGGCCACCCCATTACTCTGCCACAGCTAGTTTCTGCTCTTCATATTCCACAATCTAAAGCTACTTGTGTCCAACGCCTCATCCGTTTATTGGCACACATTGACTTCTTTTCAATTGTCAAAATGGATGATGGCAACGAAGCTTATGCTCTTACTCCTCCATCACAACTCCTTGTCAACGGCACTGATCACTGCTTATCTTCAATGGTTCATTTGTTAAACAATCCAACTCTTGTTGGTTTATACCATCAATTGGGGAATTGGACTTCTGGGGAGGACCTCACAATCGTTGAGACTGCATTAGGCTCTGGAGGCTATTGGGATTTTGTTCATCAAAATCCCACTCATTTGAAGACCTTCAATGAGGCCATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGAAGGCCTCAATTCCTTAGTTGATGTTGGTGGTGGAACTGGAAACACAGCTAAGATTATTTGTGAGGCATTTCCACAGTTAAAATATATTGTGTTGGACCTTCCACAGGTTGTCATAGGCTTAACAGGAAACAACAACCTGAGTTTTGTTGGCGGTGACATGTTTAAATTTATCCCTCAGGCTGACGCTTGGGTGTTACACAATTGGAATGATGATGATTGCATAAAGATTCTCAAAAATTGTAAAGATGCTATTTCAAGCAATGACAAAGGAAAAGTGATCATTATAGACATTGTGATAAATGAAAAGAGAGATGAGCCGGAAATGACAGAAGTTAAACTTCAACTTGATGTGGTTATGATGACTATTGTCAATGGAAAAGAGAGGGATGAAAATGATTGGAAGGGACTATTCATGAAAGCAGGCTTCAAACATTACAAGATATTCCCCACATTTTGCTTCAGGTCTCTTATTGAGCTTTATCCTTAG 1056 0.3987 MASTKNGYKASELFQAQAHLYKHMYSFLNPMSIKWAVDLGIPDIIHNHGHPITLPQLVSALHIPQSKATCVQRLIRLLAHIDFFSIVKMDDGNEAYALTPPSQLLVNGTDHCLSSMVHLLNNPTLVGLYHQLGNWTSGEDLTIVETALGSGGYWDFVHQNPTHLKTFNEAMESDSHVVRLALRDCKSVFEGLNSLVDVGGGTGNTAKIICEAFPQLKYIVLDLPQVVIGLTGNNNLSFVGGDMFKFIPQADAWVLHNWNDDDCIKILKNCKDAISSNDKGKVIIIDIVINEKRDEPEMTEVKLQLDVVMMTIVNGKERDENDWKGLFMKAGFKHYKIFPTFCFRSLIELYP. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04850 351 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Seca11g04850 351 Pfam O-methyltransferase domain 130 333 IPR001077 GO:0008171
Seca11g04850 351 Gene3D - 1 105 IPR036388 -
Seca11g04850 351 FunFam O-methyltransferase ZRP4 107 351 - -
Seca11g04850 351 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 351 IPR016461 GO:0008168
Seca11g04850 351 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 349 IPR029063 -
Seca11g04850 351 Gene3D Vaccinia Virus protein VP39 107 351 IPR029063 -
Seca11g04850 351 PANTHER O-METHYLTRANSFERASE 12 336 IPR016461 GO:0008168
Seca11g04850 351 FunFam Coniferyl alcohol 9-O-methyltransferase 3 105 - -
Seca11g04850 351 PIRSF O-mtase 1 351 IPR016461 GO:0008168
Seca11g04850 351 SUPERFAMILY "Winged helix" DNA-binding domain 11 108 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04850 Seca-Chr11 138323812 138329578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04850 30 349 Monolignol Biosynthesis Gene Families AT5G54160 30.149 8.08e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04850 K22588 K13262 gmx:100818947 419.468