Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04844 ATGACATGGTGCAATGACTCAGAAGAGGAGAGGGGGATTGAACTGATAACACCCACTACAAGTACTATTCCTAGTAACACTGTTGTTACTGATGATGGAACAAAACCAACCGAAATCCGAAACATAACTTGCCCCTCATGTGGTCATAACATTGAATTAAAAGACCAGGCTGGAATCAATGAGTTGCCGGGGTTACCAGCTGGGGTGAAATTTGATCCGAATGATCAGGAGATTCTAGAACATTTGGAAGCAAAGGTGCTCTCTGATGTGCGCAAGCTTCATCCTCTTATTGATGAGTTCATACCAACTCTTGAAGGAGAGAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGTGTAAGCAAAGATGGACAAATCCGCCACTTCTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAGAGAAGAAAGGTTCACACTGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACAGGCAAAACAAGACCAGTTTGTGTAGGTGGTGCCGTGAAGGGTTTCAAAAAGATACTAGTCCTCTACACCAACTATGGAAGGCAAAAGAAGCCAGAGAAGACTAATTGGGTAATGCATCAATACCACCTTGGAAGTAATGAAGAAGAGAAAGATGGAGAATTAGTGGTTTCAAAGGTGTTCTACCAAACACAACCTCGACAATGTGGTACTAAAGAGCCTTATGATCATAACACTCATCGAAGTGTCGTCCAAGATGATCATCACAATATGATGATGCCTAAAACTGCAGCTCTTGTGGACTATTACAACACTACTACTACTCCTTTCATGAATTATGAGCATGTGGGTATGAGTCATAACATGGAAAGTGCACCACAACTTATTCCAAACTTGGTTATGCAAGGTGATAGCTCTTCTTTTATTCGACTAGCAATGGATGCAAACAAAGCCATGCTGGACAGGAAATAG 954 0.4182 MTWCNDSEEERGIELITPTTSTIPSNTVVTDDGTKPTEIRNITCPSCGHNIELKDQAGINELPGLPAGVKFDPNDQEILEHLEAKVLSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVCVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGTKEPYDHNTHRSVVQDDHHNMMMPKTAALVDYYNTTTTPFMNYEHVGMSHNMESAPQLIPNLVMQGDSSSFIRLAMDANKAMLDRK. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04844 317 ProSiteProfiles NAC domain profile. 65 224 IPR003441 GO:0003677|GO:0006355
Seca11g04844 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 23 261 IPR044799 GO:0003700
Seca11g04844 317 SUPERFAMILY NAC domain 60 224 IPR036093 GO:0003677|GO:0006355
Seca11g04844 317 MobiDBLite consensus disorder prediction 144 160 - -
Seca11g04844 317 MobiDBLite consensus disorder prediction 138 160 - -
Seca11g04844 317 Pfam No apical meristem (NAM) protein 66 205 IPR003441 GO:0003677|GO:0006355
Seca11g04844 317 FunFam NAC domain-containing protein 73 74 228 - -
Seca11g04844 317 Gene3D NAC domain 74 228 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04844 Seca-Chr11 138218719 138221757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04844 1 231 NAC Transcription Factor Family AT4G28500 72.414 1.77e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g04844 NAM 9.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04844 - - vra:106766970 521.161