Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04838 ATGGAGCGTGTTTGTGCTTTTCTTATGCAGGCAGAGGAAGAGAGTGATGAAGTGTATTGCCAGGTTTTGTTGGTTCCTGAAAGTGAGCAAGTGCAGCAAAAGTTCCTTGAAGGGGAGGTTGATGCTGATGGTGAAGAGGAGGATACTGAAGCTGTGATGAAATCAACAACACCCCACATGTTCTGCAAGACTCTCACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTTCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCCTCACAAGAGCTTGTGGCAAAGGATCTTCATGGCCAGGAATGGAGGTTTCGACATATTTACAGGGGACAACCACGAAGACATTTGCTCACAACTGGATGGAGTGCTTTTGTGAACAAGAAGAAGCTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGGGTACTGAGATTGGGGATTCGCAGGGCAGCTCAATTGAAAAACGGCAGCACCTTTTCAGCTCTCCCTGGCCAGCAGTTGAATCTTAGCAGTCTTACGGATGTGGTTAATGCTTTATCTACAAGATGTGCCTTTAGCATTCACTACAATCCAAGGGTCAGCTCATCTGAGTTCATTGTACCTATCCACAAATTCGTAAAGAGCCTTGATTATTCTTATTCAGTCGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTCACAGGATTAGTTGTTGGAATTGCTGATGTGGATCCTGTTAGATGGCCCAGATCAAAATGGAAATGCCTACTGGTAAGGTGGGATGACATGGAAGGCACAAGGCATAATAGAGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGGTTCGGGTTCCGCTGCCAATAACTTTATGGCAGCTAGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCAAAGCTAGAATTTGCAGTTCCCAATAGGATTGGGACATCAGACTTTGGGGAATCACTAGGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGCTGATACTACTTTTGATAGTATTAGTGCTCAGGGTCACCAGTTATCTGAATTCAGGAGGTGCTATCCTGGTTCAAACATTCCTGGGATTGCTCCAACAGGAAATAGCATCAGATTCCCACAAATGACTTCTGATGTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTTAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGAGCCTTGTCTATTGATGAGGCTTGTGGAAATGGTCGCTTTGGACTTTCTGATGGTTACCAGGTGATGAGATCCAGAAATGGATGGCCTGCCCATATGAATAACAATTCTTCACATTTGCATCAATCTATTCCAGCTGTGCAAGTTTCATCTCCGTCATCTGTGTTGATGTTTCAGCAAGGAGTTAATCCAGTTTCAAACTCAGATTACAGTAACAAAATTAATCAGGTGATGGAGGGTAAAGTCCATCATCGAGGTTCATATGCTTCTGAAATGAAAGGTGGAACATTTGTATCAACCCCCTCTTATGAGCCTATTTACCATGGACTAGCTCAGGAAGGCGCAAATTTCGGTGTTTCAAATTTGCATAACCAGTTGGATAGCTCACATTCACATGATTCAGTTTCAGTTATGAGGAGCAGTCAAGAGTTAGTTCCCTCGTGTAAAAGTAGCTGCAGAGTCTTTGGTTTTTCATTGACTGAGGGTGCTCCCATTGCAAACAAAGAGGCTGACTCATCTACAGTCACTTGTCAACTAAATTCTGGACCTTCCTTTACAAGACATGTGGAAGATGATTTCCATCCAAGGCATTCACTTAGGAGCAAGGAAGTTGGAAGTTATTGTACCAAAGGTGTGCTGCAGTATTGA 1920 0.4401 MERVCAFLMQAEEESDEVYCQVLLVPESEQVQQKFLEGEVDADGEEEDTEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGVLRLGIRRAAQLKNGSTFSALPGQQLNLSSLTDVVNALSTRCAFSIHYNPRVSSSEFIVPIHKFVKSLDYSYSVGMRFRMRFETEDAAERRFTGLVVGIADVDPVRWPRSKWKCLLVRWDDMEGTRHNRVSPWEIEPSGSGSGSAANNFMAASLKRTKIGLPSAKLEFAVPNRIGTSDFGESLGFQKVLQGQEILGADTTFDSISAQGHQLSEFRRCYPGSNIPGIAPTGNSIRFPQMTSDVSCNGIGFSESFRFQKVLQGQEILPSQPYGRALSIDEACGNGRFGLSDGYQVMRSRNGWPAHMNNNSSHLHQSIPAVQVSSPSSVLMFQQGVNPVSNSDYSNKINQVMEGKVHHRGSYASEMKGGTFVSTPSYEPIYHGLAQEGANFGVSNLHNQLDSSHSHDSVSVMRSSQELVPSCKSSCRVFGFSLTEGAPIANKEADSSTVTCQLNSGPSFTRHVEDDFHPRHSLRSKEVGSYCTKGVLQY. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04838 639 SMART B3_2 61 163 IPR003340 GO:0003677
Seca11g04838 639 FunFam Auxin response factor 224 295 - -
Seca11g04838 639 Gene3D - 224 297 - -
Seca11g04838 639 Gene3D - 59 163 IPR015300 -
Seca11g04838 639 CDD B3_DNA 59 161 IPR003340 GO:0003677
Seca11g04838 639 Pfam Auxin response factor 188 268 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca11g04838 639 SUPERFAMILY DNA-binding pseudobarrel domain 53 170 IPR015300 -
Seca11g04838 639 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 589 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca11g04838 639 ProSiteProfiles B3 DNA-binding domain profile. 61 163 IPR003340 GO:0003677
Seca11g04838 639 FunFam Auxin response factor 59 163 - -
Seca11g04838 639 Pfam B3 DNA binding domain 61 162 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04838 Seca-Chr11 138006814 138014264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04838 60 420 B3 DNA Binding Superfamily AT2G33860 56.906 4.81e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca11g04838 B3 3.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04838 K14486 - gmx:100808119 1036.94