Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04835 ATGGATTTCAATACCACCAACGGTACTGAAGAAAGTGAACTGTACCATGCCCAAATCCATTTGTACAAGCATGTATACAACTTTGTTAGTTCCATGGCTCTCAAATCTGTTATGGAATTAGGCATAGCAGATGTAATCCACAACCATGGAAAACCCATCACTCTTCCTGAATTAGCCGCAGCTTTGAAACTCCACCCTTCCAAAGTCGGTGTCCTTCATCGCTTCTTGCGCCTTCTAACACACAATGGATTCTTTGCCAAAACGACAGTTCCATCACAAAACGGCAAAGAAGGGGAAGAGGAAACAGCATATGTTCTTACTCCTCCATCTAAGCTTCTCATAAGAGGCAAATCAACTTGTTTAGCACCAATTGTTAAGGGAGCACTTCATTCAAGCTCTCTTGACATGTGGCACTCCTCTAAGAAATGGTTCACTGAGGAGAAAGAACTTACCCTGTTTGAGAGTGCAACAGGGGAGAGTTTCTGGGACTTTTTGAACAAAGAATCTGAATCTGATACACTGAGCATGTTTCAAGAGGCTATGGCTGCTGATTCCCAAATGTTCAAGCTAGCCATCAAGGAGTGTAGGCATGTGTTTGAGGGTTTGGGTTCTTTAGTTGATGTGGGAGGTGGAACTGGAGGTGTTACAAAGCTCATCCATGAAGAATTCCCTAACCTAAAATGCACAGTGTTTGATCAACCACAGGTTGTGGCTAATTTGACTGGAAATGAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAGTCTGTTCCCTCTGCAGATGCAGTTTTATTGAAGTGGGTTCTGCATGACTGGAATGATGAGCTCTCCTTAAAGATATTGAAGAACAGCAAAGAAGCTATTTCAGGGAGAGGGAAAGATGGAAAGGTGATTATCATAGACATATCAATTGATGAAGAAAGTGATAATCGCCAATTGACAGAGTTGCAATTGGACTATGACTTGGTGATGTTGACTATGTTTAATGGGAAAGAAAGGACTAAGAAAGAATGGGAGAAACTCATATATGAGGCAGGTTTCAGCAGCTACAAGATTACCCCCATTTGCGGCTTCAAGTCTCTCATTGAAGTTTATCCTTAA 1101 0.4151 MDFNTTNGTEESELYHAQIHLYKHVYNFVSSMALKSVMELGIADVIHNHGKPITLPELAAALKLHPSKVGVLHRFLRLLTHNGFFAKTTVPSQNGKEGEEETAYVLTPPSKLLIRGKSTCLAPIVKGALHSSSLDMWHSSKKWFTEEKELTLFESATGESFWDFLNKESESDTLSMFQEAMAADSQMFKLAIKECRHVFEGLGSLVDVGGGTGGVTKLIHEEFPNLKCTVFDQPQVVANLTGNENLNFVGGDMFKSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISGRGKDGKVIIIDISIDEESDNRQLTELQLDYDLVMLTMFNGKERTKKEWEKLIYEAGFSSYKITPICGFKSLIEVYP. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04835 366 Pfam O-methyltransferase domain 137 348 IPR001077 GO:0008171
Seca11g04835 366 PANTHER O-METHYLTRANSFERASE 16 351 IPR016461 GO:0008168
Seca11g04835 366 FunFam Coniferyl alcohol 9-O-methyltransferase 4 113 - -
Seca11g04835 366 Gene3D Vaccinia Virus protein VP39 114 366 IPR029063 -
Seca11g04835 366 Gene3D - 3 113 IPR036388 -
Seca11g04835 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 365 IPR029063 -
Seca11g04835 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 366 IPR016461 GO:0008168
Seca11g04835 366 FunFam O-methyltransferase ZRP4 116 366 - -
Seca11g04835 366 PIRSF O-mtase 1 366 IPR016461 GO:0008168
Seca11g04835 366 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Seca11g04835 366 SUPERFAMILY "Winged helix" DNA-binding domain 11 117 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04835 Seca-Chr11 137895358 137897562 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04835 29 353 Monolignol Biosynthesis Gene Families AT5G54160 33.232 1.05e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04835 K22588 - gmx:106795493 609.372