Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04829 ATGGGTTCCGACAATGGCTTCCAAGCAAGTGAGCTGTTTCAAGCTCAGGCTCACTTGTATAATCACATCCTTAGCTTCCTTAAACCCATGTCCATCAAATGGGCAGTTGATCTTGACATACCAAATATCATCAACAATCATGCCCAACCCATTACTCTGCCCCAATTGGTCTCTGCTCTTCAAATTCCACAAACAAAGGTTGAACTTGTTCAACACCTTATGCGTTTATTGGTACACAATAACTTCTTTACAATTATCAAAATCGATGACAACAACGAAGCATATGCTCTCACTCCAACTTCAGAGCTCCTTGTCAAAGGCACTAACCATTGTTTATCTTCAATGGTTAAATTGCTAACCAACCCAGCTTCCGTTGATTTATATAATCATTTAGCTAAGTGGACTACAGGGGAGGGGCAAACAATCTATGAGACCGCATTAGGCCAAGGAGACTTTTGGAGTTTTGTTCATCAAGATCCCGCACACTTGAAGTCCTTCAATGAGGCCATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGAGATTGCAAATCAGTTTTTGGAGGCCTCAATTCCTTAGTTGATGTTGGTGGTGGAACTGGAAACACAGCTAAAATTATTTGTGAGGCATTTCCTATGTTAAAGTGTACAGTGTTGGACCTTCCACAAGTGGTTAATGGTTTAATAGGAAGCAACAATTTGAGTTATGTTGGTGGTGACATGTTTAAATCCATCCCTCAAGCAGATGCAATTTTACTCAAGTGGATTTTACATGACTGGAGTGATGATGATTGTGTAAAGATACTTAAAAATTGTAAAGAAGTTGTTTCAAGAAACAAAAAAGGAGGAAAAGTGATCATAATAGATATTGTGATAAACGAAAAACAAGATGAACATGAAATGACCGAAGTCAAGCTCTTCTTTGATATACTAATGATGGCAACTTTCAATGCAAAGGAAAGAGACGAAAAAAAATTGGAAGCAAATCTTTGCAGAAGCTGGCTTCACACATTATAA 1020 0.3843 MGSDNGFQASELFQAQAHLYNHILSFLKPMSIKWAVDLDIPNIINNHAQPITLPQLVSALQIPQTKVELVQHLMRLLVHNNFFTIIKIDDNNEAYALTPTSELLVKGTNHCLSSMVKLLTNPASVDLYNHLAKWTTGEGQTIYETALGQGDFWSFVHQDPAHLKSFNEAMESDSHVVRLALRDCKSVFGGLNSLVDVGGGTGNTAKIICEAFPMLKCTVLDLPQVVNGLIGSNNLSYVGGDMFKSIPQADAILLKWILHDWSDDDCVKILKNCKEVVSRNKKGGKVIIIDIVINEKQDEHEMTEVKLFFDILMMATFNAKERDEKKLEANLCRSWLHTL. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04829 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 331 IPR029063 -
Seca11g04829 339 PIRSF O-mtase 3 333 IPR016461 GO:0008168
Seca11g04829 339 PANTHER O-METHYLTRANSFERASE 11 329 IPR016461 GO:0008168
Seca11g04829 339 Gene3D - 2 104 IPR036388 -
Seca11g04829 339 CDD AdoMet_MTases 194 293 - -
Seca11g04829 339 FunFam Coniferyl alcohol 9-O-methyltransferase 3 104 - -
Seca11g04829 339 FunFam O-methyltransferase ZRP4 106 333 - -
Seca11g04829 339 SUPERFAMILY "Winged helix" DNA-binding domain 9 108 IPR036390 -
Seca11g04829 339 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Seca11g04829 339 Pfam O-methyltransferase domain 128 329 IPR001077 GO:0008171
Seca11g04829 339 Gene3D Vaccinia Virus protein VP39 105 336 IPR029063 -
Seca11g04829 339 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 339 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04829 Seca-Chr11 137505682 137506909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04829 29 329 Monolignol Biosynthesis Gene Families AT5G54160 33.758 5.39e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04829 K22588 K13262 gmx:100813225 370.548