Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04818 ATGAGTTCTCGCCTCAGCGACAACTGCAACTCCTGGTCCCCTTCTGAGCTTCCCATGCTACGCCAAGGCAACATCGGTGCCGCCAAGCTTGCTCTCGAGAAGAACGGTTTCGCGCTGCCTCGTTACTCTGACTCCTCCAAAGTTGCTTACGTTCTCCAAGGAAATGGAGTAGTTGGAGTGGTACTCCCTGAGTCTGAAGAAATCAAGAAGGGTGATGCCTTGGCACTCCCCTTTGGTTCTGTGACCTGGTGGTATAATAAAGAAGAAACTGAGCTGGTTGTTCTGTTCCTGGGTGACACTTCAAAAGCTCACAAGCCTGGTACAAGTCTAGCTCAGTATCTTCTCAATTCTCAAAAACCCTGCATAGAAGCTGCTCAGAACTTATACCAGGAGTTCTTGAACTTAAGATCGAAATATGAGTCCCTAGAGCGGAGACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTGGCTTGAAAGAATTGCAGAGCCTTGAGGAACAACTAGACAAAACGCTCGTACTAGCTCGACAACAGCAAATATTGTCACTAGACATGAGTACTATTAATCAATAA 576 0.4653 MSSRLSDNCNSWSPSELPMLRQGNIGAAKLALEKNGFALPRYSDSSKVAYVLQGNGVVGVVLPESEEIKKGDALALPFGSVTWWYNKEETELVVLFLGDTSKAHKPGTSLAQYLLNSQKPCIEAAQNLYQEFLNLRSKYESLERRQRHFQGEELEPLGLKELQSLEEQLDKTLVLARQQQILSLDMSTINQ. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04818 191 SUPERFAMILY RmlC-like cupins 12 120 IPR011051 -
Seca11g04818 191 Coils Coil 125 145 - -
Seca11g04818 191 Gene3D Jelly Rolls 6 182 IPR014710 -
Seca11g04818 191 SMART Cupin_1_3 3 134 IPR006045 -
Seca11g04818 191 Pfam Cupin 10 112 IPR006045 -
Seca11g04818 191 PANTHER OS03G0336100 PROTEIN-RELATED 18 131 - -
Seca11g04818 191 Pfam K-box region 124 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca11g04818 191 Coils Coil 159 179 - -
Seca11g04818 191 ProSiteProfiles K-box domain profile. 125 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04818 Seca-Chr11 137100909 137103784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04818 122 183 MADS-box Gene Family AT1G26310 45.312 7.30e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04818 - - mof:131148844 174.481