Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04816 ATGTACCATCATCACCGACATCAAGGGAAATACATTCATGCTTCTTCAAGAATGCCAATCCCCTCTGAGAGGCAAATGTTCCTTCAAACAGGAAATGAGTCTAGTGATTCTGGACTTGTGCTCTCAACTGATGCAAAGCCTAGATTAAAATGGACACATGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAATTAGGTGGAGCTGACAAGGCAACTCCAAAAATGGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTGTATCATCTAAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAATGTGACACACAAAATCACAACCAATGCAGGTGTAGGAACTGGAGAGAGACTTTCTGAAACCAATGGAACTCACATGAATAAATTAAGCCTTGGACCGCAGCCTAACAACAGAGATTTACATATAAACGAGGCACTACAGATGCAGATTGAGGTTCAGAGAAGGCTCAATGAACAACTTGAGGTACAGAGACACTTGCAGGTTCGGATAGAAGCACAAGGGAAGTACCTTCAGTCTGTGCTGGAGAAAGCACAAGAGACTCTTAGTAGACAAAATTTGGGAATAGTAGGACTTGAAGCTGCTAAAGTTCAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGCCTGAACTCAGCACTTTCAGAGCTAAAGGAACTACAAGGATTTTGCCCCCAGCAAACACAAACCAACCAGCCAAATGACTGCTCAATGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAACAAGATATTCAAAATGGGGGCATTGGCTTAAGACACTTCAATGGCCACATATTCATGGAACGAAAGGAAGCCACAGAAGCTCCCAACCTTAAGAACCCTGAACTCAATTGGTGTGATGAAGTGAAAAAGAACAACACTTTTCTCACCCCATTGGGTAAGAATGAAGAAAGAACTAGTTATGCTGTTGAAAGCAGTCCCAACAACTTACCTATGACTATTGGACTTGAAAGAGAAAAAGAGAATAGCATCAGCATATACCCTCCTGAGAGAGTAATCATAGAAAGCCACTCAGATGGTGAATTCCAGCACAGGAACACAACTAGGACAGAAACAATGAAACAAGTGGATGATAGGTTGCCTTCTTACTTTGCAGCAGCAAGATTATTGGACCTAAACACCCATGGAGACAATGAAGCTACAACCAGTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAACTGA 1266 0.4218 MYHHHRHQGKYIHASSRMPIPSERQMFLQTGNESSDSGLVLSTDAKPRLKWTHDLHARFIEAVNQLGGADKATPKMVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTNAGVGTGERLSETNGTHMNKLSLGPQPNNRDLHINEALQMQIEVQRRLNEQLEVQRHLQVRIEAQGKYLQSVLEKAQETLSRQNLGIVGLEAAKVQLSELVSKVSSQCLNSALSELKELQGFCPQQTQTNQPNDCSMDSCLTSCDRSQKEQDIQNGGIGLRHFNGHIFMERKEATEAPNLKNPELNWCDEVKKNNTFLTPLGKNEERTSYAVESSPNNLPMTIGLEREKENSISIYPPERVIIESHSDGEFQHRNTTRTETMKQVDDRLPSYFAAARLLDLNTHGDNEATTSCKQLDLNRFSWN. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04816 421 FunFam Myb family transcription factor 45 103 - -
Seca11g04816 421 Pfam MYB-CC type transfactor, LHEQLE motif 150 196 IPR025756 -
Seca11g04816 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 293 IPR044848 GO:0003700
Seca11g04816 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Seca11g04816 421 MobiDBLite consensus disorder prediction 121 145 - -
Seca11g04816 421 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Seca11g04816 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Seca11g04816 421 Coils Coil 152 172 - -
Seca11g04816 421 Gene3D - 45 103 - -
Seca11g04816 421 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04816 Seca-Chr11 137073393 137075792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04816 78 421 G2-like Transcription Factor Family AT3G04030 52.299 9.91e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca11g04816 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04816 - - gmx:100810396 679.863