Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04808 ATGTTCAAGTCCAATACCAGCAACCCCAACGACGAAATGCCCCATGACATCATTTCCTCTCCCATCTTAGCAGATATAAGTGATGATGAGAGAAATTCAGACCAAAAAACAAGATGGACTCCAAGGCCAGAGCAAATTAGTATACTGGAATCCATCTTCAACTCTGGGACGGTGAACCCTTCAAGGGAGGAGATAAGGAAGATCAAGATCCAATTGCAAGCCTATAGTGAAGTGGGTGATGCCAATATCTTTTACTGGTTCCAGAACCATAAATCCAGGAGCAGGAACAAGCTCCGCCAGCTCAAGTACATAAGGGGAAAGAATCTAAAACCACAACAAAACTCTGTTTCTCTCCCAACAGCACCTACATCCTCTTCTTCTTCCTTTGAGAAATCCTCTCAAGAGGAAGTAATGATACCCTCAATCCCAATGGAATTCTCCCTTAATGTCAATGATTGGGTGCCTAATTCCCCCATAGGGTCTGTGAACCAGACTAATTTTCAGACCCAAATTCAGACCAATTTTCAGCTACCTATAGTAGCTGAGCCTTTGTTTTTCCCTCTGCACTATAATGATCAAGAACTAGTAGTGGCTAATAATGACATGACAACATGTTACAACATGTTTCAACCTCAACCTCAACAATATTTTGATTACTTCAACATGTTTCAACCTCAACCTCAACAATATTTTGAATACTTCAACATGTTTCAACCTCAACCTCAACAATATTTTGAACCTTATACTAGTCCATCTCTCAATGATATCATGAACTATGGAACCACCCTAGAGGAATACCAAGATCTAGACAAGGTCATGGAGACAATGCACCAACAGTCACAGCTCAATTTTTGTCCCACTCCAACTTCAATACCTATTGTTCCTCCCATCACTGATACAGAATTTACTGTTCCATACTACAACAATGAACTTCAAGGTATTTTTGAGGAAGCCGGTGGTACCGAAGCAAAATGTACAGTGTTCTTTAACGAACTCGCATTTGAGGTTGCGGTAGGGCCCTTCAACGTGATTGAAGCCTTTGGGATTGGGGCAATTCTCATGGATTCCACCGGAAACTTTGTTCCCACGGACGAGTTTGGTTACACCTTTCAGTCACTCCAACATGGCGCATCCTATTATCTGTTGTGGTGTATGTGA 1158 0.4171 MFKSNTSNPNDEMPHDIISSPILADISDDERNSDQKTRWTPRPEQISILESIFNSGTVNPSREEIRKIKIQLQAYSEVGDANIFYWFQNHKSRSRNKLRQLKYIRGKNLKPQQNSVSLPTAPTSSSSSFEKSSQEEVMIPSIPMEFSLNVNDWVPNSPIGSVNQTNFQTQIQTNFQLPIVAEPLFFPLHYNDQELVVANNDMTTCYNMFQPQPQQYFDYFNMFQPQPQQYFEYFNMFQPQPQQYFEPYTSPSLNDIMNYGTTLEEYQDLDKVMETMHQQSQLNFCPTPTSIPIVPPITDTEFTVPYYNNELQGIFEEAGGTEAKCTVFFNELAFEVAVGPFNVIEAFGIGAILMDSTGNFVPTDEFGYTFQSLQHGASYYLLWCM. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04808 385 Pfam Homeodomain 36 95 IPR001356 GO:0003677
Seca11g04808 385 SMART HOX_1 34 101 IPR001356 GO:0003677
Seca11g04808 385 Gene3D - 35 104 - -
Seca11g04808 385 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 383 IPR044557 GO:0003700|GO:0050793
Seca11g04808 385 MobiDBLite consensus disorder prediction 112 133 - -
Seca11g04808 385 ProSiteProfiles 'Homeobox' domain profile. 32 97 IPR001356 GO:0003677
Seca11g04808 385 SUPERFAMILY Homeodomain-like 30 100 IPR009057 -
Seca11g04808 385 MobiDBLite consensus disorder prediction 1 41 - -
Seca11g04808 385 FunFam WUSCHEL-related homeobox 11 36 103 - -
Seca11g04808 385 CDD homeodomain 36 97 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04808 Seca-Chr11 136895892 136897609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04808 1 382 Wox Gene Family AT5G45980 31.726 4.90e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca11g04808 Homeodomain 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04808 - - aprc:113852083 258.07