Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04805 ATGGTAAAACAGAACCCCCCATGCGCTGCTTGCAAGCACCAGAGGAAAAAGTGTAACGAAGATTGTATTCTTGCTCCTTTTTTCCCATCACACAAGACCCAACAGTATGAAGCGGTTCACAAAGTTTTTGGTTTCAACAATGTCGCAAAGATGCTCACAAACCTTAGTCAAGAAGAAAGACAAGAAGCCATCAAGTCTTTTGAATGGGAAGCCATGATGTGGCAGCAAGACCCTATCTTTGGACCCCTTGGTGCCTTCAACCAAGCCCGTAACATGATCACACAACTCTTGAACCAACAACAACAACAACAACGACCGGTTGCTCTGACCCAAGGTTCATCACCCTTTAACAATAGCACCACCAATGAGGCAGTGTCATACCCATATGTGTTTTATAGCTTTAGGGGTATTTTGCAGAATGAGGCAGGGGACCCAGAAATATTGACAGATGTTCCTGTCCCTAATGCTTTGCATCCTGCACAAGGCAGAGGAGTTAGCCAAAGTGGTGGAGTAGGGCAGGCACAAGAGGACCATGGAGTGCTAGTAACCCCTGTTGAGAATAGTGTTACTGAAGGTAACATTGATCATACAATGGCACAAAACAGACTAAGGAGCCAAACTACAGAATCACAGCATCCTTCTTACTATCCTCTTGATAATACTACCAGAACTAAGCAAGAAGACCAACATTGCTTAAAACAGCACAAGGTTCATCCCTTGCCTCTCTCATTGAAAATGAAAAAGAGAAAGTGTAGAAATATGTGGTTTTCTTATCTTATAATTTATACAAAAAAGTATGTAGCAATGGTAGAGTAA 816 0.424 MVKQNPPCAACKHQRKKCNEDCILAPFFPSHKTQQYEAVHKVFGFNNVAKMLTNLSQEERQEAIKSFEWEAMMWQQDPIFGPLGAFNQARNMITQLLNQQQQQQRPVALTQGSSPFNNSTTNEAVSYPYVFYSFRGILQNEAGDPEILTDVPVPNALHPAQGRGVSQSGGVGQAQEDHGVLVTPVENSVTEGNIDHTMAQNRLRSQTTESQHPSYYPLDNTTRTKQEDQHCLKQHKVHPLPLSLKMKKRKCRNMWFSYLIIYTKKYVAMVE. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04805 271 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca11g04805 271 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Seca11g04805 271 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04805 Seca-Chr11 136845201 136846016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04805 7 86 AS2 family AT1G06280 51.250 1.30e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca11g04805 LOB 3.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04805 - - cam:101500246 179.874