Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04798 ATGGTTTTACTCTCACAAACTGAGTTACCCCTCAACGAGAACGATTCTCAAGACATGGTCATATACCAAGTTCTGAACGAGGCCACTGCTGTGAACAACACACTCATACAACAGAGGCATCAAAATGGCCTAGAACCAACCAAGAATATCAGCAAGAAGCATTACAGAGGCGTGAGGCGTCGACCTTGGGGGAAATTTGCAGCTGAAATTCGTGACTCAACAAGAAATGGAGCTAGGATATGGCTTGGAACATTTGAAACAGCTGAAGAGGCTGCTATAGCTTATGATAAAGCAGCTTTCAAAATGAGGGGTGCTAAGGCTTTGCTCAATTTCCCACCTGAAATTGTTGTTGCTGCTTCTTCTATGCAATTGAATTCTAATTCTAAGCCTGATTTGAGCTCAGGGAGCTTCAACAATAAGGGTTCTGAGTCAAATGCTAGCAATTCTTGCACAACTTCCATTGGGGTAGGTAGTACTAGTGCCCAATCAGAAAGCACAAGTAGTTTTGGACGCTAG 516 0.4341 MVLLSQTELPLNENDSQDMVIYQVLNEATAVNNTLIQQRHQNGLEPTKNISKKHYRGVRRRPWGKFAAEIRDSTRNGARIWLGTFETAEEAAIAYDKAAFKMRGAKALLNFPPEIVVAASSMQLNSNSKPDLSSGSFNNKGSESNASNSCTTSIGVGSTSAQSESTSSFGR. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04798 171 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Seca11g04798 171 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Seca11g04798 171 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Seca11g04798 171 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Seca11g04798 171 MobiDBLite consensus disorder prediction 127 171 - -
Seca11g04798 171 PANTHER DNA-BINDING DOMAIN 42 147 IPR044808 GO:0003700|GO:0009873
Seca11g04798 171 FunFam Ethylene-responsive transcription factor 2 53 114 - -
Seca11g04798 171 SUPERFAMILY DNA-binding domain 54 114 IPR016177 GO:0003677
Seca11g04798 171 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Seca11g04798 171 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
Seca11g04798 171 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04798 Seca-Chr11 136780307 136780822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04798 9 116 AP2-EREBP Transcription Factor Family AT3G23240 59.821 8.43e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g04798 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04798 K13433 - zju:107411165 194.512