Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04797 ATGGCTATTCATGAAGGGATTCTTGAAAATGTATGGGCTAAAATCATAAGCAGTGATAGAGCACATGATGGAACAGGTGTTGCAACAGAATCTCCCAATTCATGGGAAGAACTGCCTAATCCTGATGGAAGAGATGGATCAATGGAAATTCTGAAAAGGCTTCCAAGTTTAGGGAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAAATGTTAGATGGTTTTCTACCTGCTACAACCAAAACAGAAGATTCTATTGACACCAATGTGGAAATTGGAAATGCTACTAAATCCAATCACAAGGTATTAGAAGATGCTGTGAGAGCAGATAATAATAAGGGAGGTGCAACAAAACACTACAGGGGAGTGAGGAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGACTCATCCAAGAAAGGTGCTAGAGTTTGGCTTGGGACATTTGATACAGCTGAAGAAGCAGCTCTAGCTTATGATAAAGCTGCTTTGAGAATTAGAGGTGCAAAGGCAAACCTCAATTTCCCAATTGAGACAGTTGCAAAGGCTTTAGCATTTGACCAGAAAGGAAGAACTGATTTCATTCCATGTGACTCTAGAACTCTTCAGGAGGATTGTTCTGCTTGCACATATACAGGGGACAAAGAAATTAATTCCTGCAAGTCCCGGAAGAGAAGATCAAGGGGAAGGGAAGAATTTGTGGATTTAGGGAATGAACAACCTGCAACCAAAAAAATAACAAGCTTGGAAGGAGTGCTAGAAAATGAACTTGGTGTTTTTGTGTTTCAGGACTTGGGGAGTGATTACTTGGACAATTTACTATCTTCTTTTTGA 837 0.405 MAIHEGILENVWAKIISSDRAHDGTGVATESPNSWEELPNPDGRDGSMEILKRLPSLGRWISMGADFWEEMLDGFLPATTKTEDSIDTNVEIGNATKSNHKVLEDAVRADNNKGGATKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGAKANLNFPIETVAKALAFDQKGRTDFIPCDSRTLQEDCSACTYTGDKEINSCKSRKRRSRGREEFVDLGNEQPATKKITSLEGVLENELGVFVFQDLGSDYLDNLLSSF. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04797 278 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Seca11g04797 278 PANTHER DNA-BINDING DOMAIN 100 240 IPR044808 GO:0003700|GO:0009873
Seca11g04797 278 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Seca11g04797 278 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Seca11g04797 278 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Seca11g04797 278 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Seca11g04797 278 SUPERFAMILY DNA-binding domain 119 179 IPR016177 GO:0003677
Seca11g04797 278 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Seca11g04797 278 CDD AP2 118 178 IPR001471 GO:0003700|GO:0006355
Seca11g04797 278 MobiDBLite consensus disorder prediction 22 47 - -
Seca11g04797 278 FunFam Ethylene-responsive transcription factor 2 118 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04797 Seca-Chr11 136740324 136741160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04797 7 278 AP2-EREBP Transcription Factor Family AT4G18450 36.859 3.64e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g04797 AP2 8.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04797 - - gmx:100820226 328.561