Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04785 ATGCATTTCCCATCCACTATTCCTCTTTGGCTCTCCTATTTATTCATCTCCTTTGTTCTCACCAATGGCTACCAAGCTGAGCCTACAAATGGAGACAACAAAGTTATATCTATTGGTGCAATGATTGATGTTAACTCTCGTATTGGGAAAGAACAACGAGTAGCCATGGATATTGCAGCTCAAAGATACAACAATACTTCAAAAACCCACAAGCTGGCTCTTCATTTTCAAGAACCCACCAAGGATCCCTTCAGAGCCACTTCTCTTGCTGAAGAGATGATTAAAACTCAAAAGGTGCAAGTGATTGTAGGGATGAACACATGGGCAGAAGCAGCTTCAGTAGCTGAATTAGTACACCAAACTCGAGTTCCTATCATATCCTTTGTAGCACCAACCATTACCCCACCATTGATGCAAATTCGGTGGCCTTATTTGGTAAAAATGGCTAACAATGGTACTGCATATGTAAAATGCATTGCAGATATGGTGCATGCTTATGGTTGGCAAAAATTAGTAGCCATCTATGAAGATGATACCTATGGTGGAGATTTTGGGATGCTAGCACTGCTATCTGAGGCCCTCCAAGATGTTGGTTCAATGATTGAATACCGTTTAGCTCTGCCATCACATTCTTATCTGCCTAATCCTGGAGAGTTTATTCAAGAAGAGCTGTCTAAGTTAACAAAAAATACACCATCTAGAGTGTTCATTGTTCTTCAATCATCATTAGATATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTTGTGGATAAAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGTTGGACTCTGTCAATAAGTCTGGTACTTCCTATATGCAAGGAGCTTTAGGAATCAAGACATACTTCTCTGAAAATAGCAGTGAGTATCAACATTTTGAGGCTCAATTCAGGAGAACTTTTCGGTACAAGCATCCTGAGGAAGGTGATAGCAACCCTGGATTTTATGCTCTACAAGCATATGATAGCATTAGAATTGTTGCACAAGCAGTGGACAGAATGGCCAGTGGCAATGGTAGTGGGAGAGAGACTTTATTAAGAGAAATATTGGCTAGCAATTTCCTTGGTTTAAGTGGAAAAATTCAATTTGAATCACTTCAGCTCTTGCAGAATCCTATCTTGAGGATTGTAAATGTAAATGGGAAGAGTTACAGAGAATTAGACTTTTGGACTCTAGAAAGTGGGTTCATTCCCACAGAACAAGGTGGAAATAGTACTTTTAGGAACACAGAAAGTTTGAGTGGTGTAGTGATTTGGCCTGGAAAAACAACTAGAGTTCCAAAGGGCTGGAATATGCCTACTAAACAAAATCCAATGAAAATTGCAGTTCCTGGAAGAACAGCATTTTCCAAGTTTGTCAAGGTTGATTATGATGAGCATGAAAAGCGATATAAGTATTCCGGATTTTGCATTGAAATTTTTGAGGAGGTGTTAGGACTTTTGGAGTATGATCTGCCATATGAATATTATCCCATCAATGGGACCTATCCTGATCTGGTTCAACTTGTGTATAACAAGACTTATGATGCTGTTGTTGGCGACATGACCATACTGGCAGAGAGATTGCAATATGTGGATTTCACTGTGCCATATACAGAATCAGGATTGTCAATGGTAGTTACAGAAAGGTCCCAAGAATCCACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGCAGTAACTGGTGCCATCTTGATTTACACAATGTTAGTAGTGTGGTACTTGGAGAGGGATTCCAATCCAGAGTTTGAAGGCAATTGGAAAGTGCAGATCAGCACTGCTCTTTGGTTTACTTTCTCCTCTCTATTCTTTGCTCATAGGGAGAAAATGTATAGCAACTTATCTCGTGTAGTCATGGTATCATGGCTCTTTCTAGTTTTGATTCTAAACTCAAGCTACACTGCGAGTCTTTCTTCAATGCTCACAGTTCAACAACTGAAACCAAATGTCACAGACATTGAGTGGCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACTTAGAGAAAGTCGAAACATTCAAACCAGAGAACATTGTAAACATTAATAGTGAATTCAGTTATGTCAGTGCATTCAAAACCGACTCAATAGCAGCTGCTTTCCTGGAACTCCCTTATGAAAAAGCATACATCAGCAAATACTGCAAAGGGTACTCTGGCTCTACACCTACCACCAAATTTGGAGGACTGGGATTTATGTTCCAGAAAGGCTCCCCCCTGGCCAAAGATGTTTCTAAAGCTATTTTGCAACTCTTAGAGGTGGGGGAACTGCAGAGGTTAGAAGAGAAATGGTTGAAGCCCTCAGGGGAGTGCTACAACAATTTGACCTCCGAGAGTACAGAAAGTTTGAAGCTTGGAAGCTTCTGGATTCTCTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTTTCTACCATCCATTCGCTAAAATCAAGCCTAAGATGCCCAAATGATAGGAGCCCGTGGAAAAGGGTGGTTAAGTTAACTAGAAAGATTTGTAGCAGAAAGCATAATAAAGAGACTACGGCACAGAAAGATGTTGTTACTTCCGGATGGGATTGTATCAGTATCACTGACAACCCTGAGCATCAGCAGGCAATGTCTCTTCAATTACCAGAAATCATAACTGTCTCTTCCCCACCAACACAGTTGTAA 2727 0.403 MHFPSTIPLWLSYLFISFVLTNGYQAEPTNGDNKVISIGAMIDVNSRIGKEQRVAMDIAAQRYNNTSKTHKLALHFQEPTKDPFRATSLAEEMIKTQKVQVIVGMNTWAEAASVAELVHQTRVPIISFVAPTITPPLMQIRWPYLVKMANNGTAYVKCIADMVHAYGWQKLVAIYEDDTYGGDFGMLALLSEALQDVGSMIEYRLALPSHSYLPNPGEFIQEELSKLTKNTPSRVFIVLQSSLDMVIHLFREASQMGLVDKESAWIIPESITNLLDSVNKSGTSYMQGALGIKTYFSENSSEYQHFEAQFRRTFRYKHPEEGDSNPGFYALQAYDSIRIVAQAVDRMASGNGSGRETLLREILASNFLGLSGKIQFESLQLLQNPILRIVNVNGKSYRELDFWTLESGFIPTEQGGNSTFRNTESLSGVVIWPGKTTRVPKGWNMPTKQNPMKIAVPGRTAFSKFVKVDYDEHEKRYKYSGFCIEIFEEVLGLLEYDLPYEYYPINGTYPDLVQLVYNKTYDAVVGDMTILAERLQYVDFTVPYTESGLSMVVTERSQESTWMFMKPFTWQMWAVTGAILIYTMLVVWYLERDSNPEFEGNWKVQISTALWFTFSSLFFAHREKMYSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLKPNVTDIEWLKKNNMKIGCDGDSFVRTYLEKVETFKPENIVNINSEFSYVSAFKTDSIAAAFLELPYEKAYISKYCKGYSGSTPTTKFGGLGFMFQKGSPLAKDVSKAILQLLEVGELQRLEEKWLKPSGECYNNLTSESTESLKLGSFWILYVISGATSTICFLLSTIHSLKSSLRCPNDRSPWKRVVKLTRKICSRKHNKETTAQKDVVTSGWDCISITDNPEHQQAMSLQLPEIITVSSPPTQL. 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04785 908 FunFam Glutamate receptor 155 324 - -
Seca11g04785 908 CDD GluR_Plant 450 787 - -
Seca11g04785 908 Pfam Bacterial extracellular solute-binding proteins, family 3 477 788 IPR001638 -
Seca11g04785 908 Gene3D - 344 455 - -
Seca11g04785 908 SMART GluR_14 453 789 IPR001320 GO:0015276|GO:0016020
Seca11g04785 908 Pfam Receptor family ligand binding region 54 394 IPR001828 -
Seca11g04785 908 SUPERFAMILY Periplasmic binding protein-like I 33 443 IPR028082 -
Seca11g04785 908 Gene3D - 733 794 - -
Seca11g04785 908 Gene3D - 460 560 - -
Seca11g04785 908 FunFam Glutamate receptor 561 691 - -
Seca11g04785 908 FunFam Glutamate receptor 451 562 - -
Seca11g04785 908 CDD PBP1_GABAb_receptor_plant 37 409 IPR044440 -
Seca11g04785 908 SUPERFAMILY Periplasmic binding protein-like II 428 788 - -
Seca11g04785 908 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 857 IPR015683 -
Seca11g04785 908 Pfam Ligand-gated ion channel 789 818 IPR001320 GO:0015276|GO:0016020
Seca11g04785 908 PIRSF IGluLR_plant 5 897 IPR017103 -
Seca11g04785 908 FunFam Glutamate receptor 753 786 - -
Seca11g04785 908 Gene3D - 31 156 - -
Seca11g04785 908 Gene3D - 561 698 - -
Seca11g04785 908 Gene3D - 157 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04785 Seca-Chr11 136559074 136563143 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04785 13 827 Ion Channels AT2G29120 34.313 6.18e-147 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04785 - - gmx:100780320 1313.52