Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04782 ATGTGTGGCACACTTTGCCAAGAGATGTATCCCCTTTCCACTACCAAGTTCAAAGTTTCAAATGTTTGGCACTTGCTTCCTGCACTCATATTGTTGTTTTCTTTCATTTCCTTTGGAGCTGAGGCCACCAGCAATGACAAAGTTGTATCCATTGGTGTAATCATTGACCTTAACTCTCGAGTTGGGAAAGAAGAGAAAGTAGCTATTGAACTTGCAGCTCAAAATTACAACAACAGTTTAAAGTACCACAAACTGTCTCTACATTTCAAGGACTCTGGAGGGGTGGCCCTAAGAGCAATTTCTATTGCTGAAGAGATGATTAAAATAAAGAAAGTGCAAGTGATAATTGGTATGCACTTATGGCAGGAAGCAATTTTGGTAGCTGAGGTTGGGAGTCAAGCTCAAGTTCCTGTTATTTCATTTGCTTCACCAATCACTACCCCCTCATTGTTTTCATTTCGTTGGCCTTTCTTAATGCTAATGGCTCATAATAGTACTGCATATGTAAAATGCATTTCTGATATAGTTCATGCATACAATTGGCAAAGAGTTACAGTGATTTATGAAGAGGATGCATATGGTAGTGATTATGGGATGTTAGCACTTCTATCTGAGGCACTCCAAACTGTTGGTTCACAGATTGAGCTCTCTTTGGCTCTCCCTCCTTATTCTTCTTTGTCTCATCCAAGTGGGGTAGTTCAAGTAGAGCTACTGAAGCTGCTTCACACTCAATCGCGTGTGTTCATAGTTCTACAATCATCACTACCTATGGCAGCTTGTTTGTTTGCAGAAGCTAGAAAGATGGAATTCTTGGATAAGGAAACAGCTTGGATAGTTCCAGAAAGAATAACTTATATGCTTGACTCTGTTAGTGACTCTGTCATTTCCTCCATGGAAGGTGTTTTGGGAATCAAGACTTATTATTTACAAAATAGTATTGATTATCAAAGTTTTCAAGTCCAATTCAGGAAAAGTTTTCAAAAAGAAAATCCAGAAGAAGAAAACCTCCAACCTGGATTTTATGCATTGCAAGCATATGATAGCATTAGAGTTGTTACACTTGCCATGGAGACATTAAGCAATCACAACAGTAGTCCTAAGATATTTCTAAAAGAAATGTTGACTTGCAATTTTCTTGGTTTAAGTGGAAAAATAAAATTTGAACATGGGCAAACCTTGCCCTCTCCTATATTTAGGATTGTAAATGTGATTGGAAAGATGTACAAAGAAATAGACTTTTGGACAGAAGAGTATGGATTTTCCAAAACCCTTTCCTTTGAATTAGCTGGTCAGCCAGTTAAAAATAATGACGTCACCAGTACAATAGAAGGTTTGACAGGTCCTGTAATTTGGCCTGGGAATCTACTGAGGACTCCAAAGGGTTGGAGAATGCCTACTAGAGCAAAACCAATGAAAATTGGTGTTCCAAGAAGGACTCCATTTGAGAAGTTTGTGAAGGTTGAGTATAATGAAAAATCAAATCAAACCAAGTACAGTGGATTCTGCATTGAAATTTTTGAAAAGATTCTAGATCTATTGCAGTATGATCTACCATATGAAATAGTTCCTTCTAATGGAACCTATAGTGATCTGGTTTATCTTGTCTATAACAAGACTCTTGATGCTGTTGTTGGTGACTTAACCATTGTGGCTGACAGAATGCAATATGTGGATTTTACACTGCCATATACAGAGTCAGGATTGTCAATGATAGTTCCAGCAAAATCTGAGGATACAGCTCTGATTTTTATGAAGCCCTTTACCTGGGAAATGTGGATGGTCATAGTTTCCATCCTCATCTACACCATGTTTGCAGTTTGGTACTTGGAGCGGGATTCCAATCCAGAATTCAGTGGTCCATGGAAGAATCAGATTAGCATTGCTCTATGGTTTACCATCTTTTCTCTATTCTTTGCCCACAGGGAGAAAATCTATAGCAACTTCACTCGAATGGTGATTGTTGTGTGGCTCTTCCTTGGTTTGATCCTAACCTCAAGCTACACTGCTAATTTATCCTCAATGCTCACTGTTCAACAATTGCAACCAAATGTTAAAAACATTGAGTCACTTAAATGGAGCAACTCCAAAGTCGGCTTCTCAGATGATCCATTTGTAAGAAAATATCTAGAAAACGTGCTTCATTTCAAATCACAGAATATTATTGAAGTTAGCGGGGACTACAATTACATTGAGGATTTCAAAAACAAGCGCATAGCAGCTGCTTTTATTGAAATCCCCTATGAAAAGGTATTCATCAGCAAGAACTGCCGGGGATACTCTGCCTTCACTCCTACCAACAGATTTGGAGGGCTAGGCTTTATGTTCCAGAAAGGTTCTCCAATTACCAGAGACTTTTCCAAAGCTATATTGCAGCTCTCAGAGAATGGAGACACGAAGTTACTAGAAGATAAATGGTTGAACAACCCAGATGAGTGTTCAACCAATATAACTACCAATGCCAACGGAAGCTTGAAGCTTCAAAGCTTCTGGGTTGTTTTTGCTGCATCTGTTTTCACTTCTACCTTTTGTGTGACAATATCCAAGGTACTGTCAATGAAAAGTAGTCAGCAGCATCAAGAGGCATTTGAAGGCAATCATGCTTGTTCAACTATTGTGACTGTTTGGAAGAAGGTGCTCACTCTACGGAAGTATATATACTATTCTAAAAACACTAATCAAAGGCAAGCTCCAAATGCAGCACATATAGAGGATGTAGAAGAATTTTGTTTGGAGCTTGAACAAGGAAGCACACCTGACACTGTAGCTGGAAATCAGGCTTTGCCACCACCAGAGAACTCTGCCTCGCCATAA 2811 0.3892 MCGTLCQEMYPLSTTKFKVSNVWHLLPALILLFSFISFGAEATSNDKVVSIGVIIDLNSRVGKEEKVAIELAAQNYNNSLKYHKLSLHFKDSGGVALRAISIAEEMIKIKKVQVIIGMHLWQEAILVAEVGSQAQVPVISFASPITTPSLFSFRWPFLMLMAHNSTAYVKCISDIVHAYNWQRVTVIYEEDAYGSDYGMLALLSEALQTVGSQIELSLALPPYSSLSHPSGVVQVELLKLLHTQSRVFIVLQSSLPMAACLFAEARKMEFLDKETAWIVPERITYMLDSVSDSVISSMEGVLGIKTYYLQNSIDYQSFQVQFRKSFQKENPEEENLQPGFYALQAYDSIRVVTLAMETLSNHNSSPKIFLKEMLTCNFLGLSGKIKFEHGQTLPSPIFRIVNVIGKMYKEIDFWTEEYGFSKTLSFELAGQPVKNNDVTSTIEGLTGPVIWPGNLLRTPKGWRMPTRAKPMKIGVPRRTPFEKFVKVEYNEKSNQTKYSGFCIEIFEKILDLLQYDLPYEIVPSNGTYSDLVYLVYNKTLDAVVGDLTIVADRMQYVDFTLPYTESGLSMIVPAKSEDTALIFMKPFTWEMWMVIVSILIYTMFAVWYLERDSNPEFSGPWKNQISIALWFTIFSLFFAHREKIYSNFTRMVIVVWLFLGLILTSSYTANLSSMLTVQQLQPNVKNIESLKWSNSKVGFSDDPFVRKYLENVLHFKSQNIIEVSGDYNYIEDFKNKRIAAAFIEIPYEKVFISKNCRGYSAFTPTNRFGGLGFMFQKGSPITRDFSKAILQLSENGDTKLLEDKWLNNPDECSTNITTNANGSLKLQSFWVVFAASVFTSTFCVTISKVLSMKSSQQHQEAFEGNHACSTIVTVWKKVLTLRKYIYYSKNTNQRQAPNAAHIEDVEEFCLELEQGSTPDTVAGNQALPPPENSASP. 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04782 936 Gene3D - 722 814 - -
Seca11g04782 936 SUPERFAMILY Periplasmic binding protein-like I 44 462 IPR028082 -
Seca11g04782 936 FunFam Glutamate receptor 580 718 - -
Seca11g04782 936 CDD PBP1_GABAb_receptor_plant 50 424 IPR044440 -
Seca11g04782 936 Gene3D - 580 713 - -
Seca11g04782 936 MobiDBLite consensus disorder prediction 917 936 - -
Seca11g04782 936 FunFam Glutamate receptor 168 336 - -
Seca11g04782 936 FunFam Glutamate receptor 470 581 - -
Seca11g04782 936 PIRSF IGluLR_plant 20 918 IPR017103 -
Seca11g04782 936 SMART GluR_14 472 808 IPR001320 GO:0015276|GO:0016020
Seca11g04782 936 Gene3D - 472 579 - -
Seca11g04782 936 Gene3D - 164 416 - -
Seca11g04782 936 Pfam Receptor family ligand binding region 66 404 IPR001828 -
Seca11g04782 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 854 IPR015683 -
Seca11g04782 936 Pfam Ligand-gated ion channel 808 836 IPR001320 GO:0015276|GO:0016020
Seca11g04782 936 SUPERFAMILY Periplasmic binding protein-like II 448 808 - -
Seca11g04782 936 CDD GluR_Plant 469 806 - -
Seca11g04782 936 Pfam Bacterial extracellular solute-binding proteins, family 3 494 807 IPR001638 -
Seca11g04782 936 Gene3D - 51 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04782 Seca-Chr11 136453027 136457467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04782 49 846 Ion Channels AT2G29120 32.855 5.58e-142 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04782 - - cill:122296491 994.956