Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04775 ATGCATTTCACATCCACAAATCCTCAACCTCTTGCAGGATTTTGGCTCTCATATTTATTCATCTCCTTTCTTCTCATTATTGGCTACCAAGCTGACCCTACAAATGGAGACAAAAAAGTTATTTCTATAGGTGCAATCATTGACCTTAACTCTCGTGCTGGGAAAGAAGAGAAAGTAGCTATTGAACTTGCAGCTCAAAATTACAACAACAATTCAAAGTACCACAAGCTGACTCTACATTTCAAGGACTCCGGAGGGGTGGCCCTCAGAGCAATTTCTATTGCTGAAGAGATGATAAAAATAAAGAAAGTGGAAGTGATAATTGGTATGCACTCATGGCAGGAAGCAATTTTGGTAGCTGAGGTTGGGAGTCAAGCTCAAGTTCCTGTTATTTCATTTGCTTCACCAATCACTACCCCCTCATTGTTTTCATTTCGTTGGCCTTTCTTAATGCTAATGGCTCATAATAGTACTGCATATGTCAAATGCATTTCTGATATAGTTCAAGCATACAATTGGAAAAGAGTTATAGTGATTTATGAAGAGGATGCATATGGTAGTGATTATGGGATGTTTGCACTTCTATCTGAGGCACTCCATAATGTTGGCTCTCAGATTGAGCTCTCTTTGGCTCTCCCTCCTTATTCTTCTCTGTCTAATCCTAGTGGGGTAGTTCAAGTAGAGTTGCTGAAGCTGCTTAATACTCAATCTCGTGTCTTCATAGTTCTACAATCATCACTACCTATGGTAACTTGTTTGTTTGCAGAAGCTAAAAAGATGGAACTCTTAGATAGGGAAACAGCTTGGATAGTTCCAGAAAGCATAACTCACATGCTTGACTCTGTTAGTGAATCTGTCATTTCCTCCATGGAAGGTGTTTTAGGAATAAAGACTTACTACTCACAAAATAGTACTGATTTTCAGAGTTTCCAAGAAAATCCAGAAGAAGAAAACCCCAAACCTGGATTTTATGCACTTCAAGCATATGATAGCATTAGAGTTGTTACAAGTGCCATGGAGACATTAAGAAATCATACCAGCAGCCCTAAGATATTTCTAAAAGAAATGCTGTCTTCCAATTTCCTTGGTTTAAGTGGAAAAATAAAATTTGAACATCAGCAGACCTTGCCCTCTCCTATACTTAGGATTGTAAATGTGATTGGAAAGAGTTACAAAGAAATTGACTTTTGGACAGAAGAGTATGGATTCTCCAAAACCCTTTCCTTTGAATTAGCTGGTCAGGCAGTAAAAAATAATGAGGTCACCAGTACAACAGAAGGTTTGGCAGGTCCAATAATTTGGCCTGGGAATGTAATGAGCACTCCAAAGGGTTGGAGAATGCCTACAAGAGCAAAACCATTGAAAATTGCTGTTCCAAGAAAGACTCCATTTGAGAAGTTTGTGAAGGTTGAGTACAATGAAAACTCAAATCAAACTATGTACAGTGGTTTCTGCATTGAAATTTTTGAAAAGGTTCTACATCTATTGCAGTATGATCTACCATATGAAATAGTTCCCGTTAATGCAACCTACCGGGATCTGGTTTTTCTTGTTTATAATAAGACTTTCGATGCTGTTGTTGGTGACATAACCATTTTGGCTGACAGAATGCAATACGTGGATTTTACACTGCCATATACAGAGTCAGGATTGTCAATAATAGTTCCAGCAAAATCTGAGGATACAGCTCTAATTTTTATGAAGCCCTTTACTTGGGAAATGTGGATGGTTACTGTTTCCATTCTCATTTACACCATGTTGGCAGTTTGGTACTTGGAGAGGGATTCCAATCCAGAATTCAATTGTCCATGGAAGAATCAGATTAGCATTGCTCTATGGTTTACTGTCTTTTCTCTATTATTTGCCCACAGGGAGAGGATCCAGAGCAACTTGACTCGAATGGTGATTGTTGTGTGGCTCATCCTTGGTTTGATCCTAACCTCAAGCTACACTGCTAATCTATCCTCAATGCTCACAGTTCAACAATTGCAACCAAATGTTAAAAACATTGACTCACTTATTTGGAGCAACTCCAAACTCGGTTACTCAAGTGATGAACCATATGTGAGAAAATATATTGAAAACATGCTTCATTTCAAATCAAATAACACTATCAAAATTTACATGAATAACAGCTACAATGAAAATTTCAAAAGGAACCGTGTAGCAGCTGCCTTGATTGAAACGCCCTATGAAAAGGTATTCATCAGCAAGAACTGTGGGGGATACTCTGCCTTCAAACTTGCCCACAGATTTGGAGGGCTAGGCTTTATGTTCCAAAAAGGTTCTCCAATTACCAGAGACTTCTCAAAAGCTATATTGCAGCTCTTAGAGAATGGGGACATGAAGTCACTAGAAGATAAATGGTTGAACAATGCAGATGAGTGTTCAACCAATATAACCACCAATGCCAACGGAAGTTTGAAGCTTCAAAGCTTCTGGGTTCTCTTTGCAGCTTCTGCTGAGGCCACTAGCAATGAGAAAGCTGTATCCATTGGTGTAATCATTGACCTTAACTCTCGTGTTGGGAAAGAAGAGAAAGTAGCTATTGAACTTGCAGCTCAAAATTACAACAACGGTTCAAAGTACCACAAGCTGTCTCTACATTTCAATGACTCTGGAGGGGTGGCCCTAAGAGCAATTTCTATTGCTGAAGAGATGATTAAAATAAAGAAAGTGGAAGTGATAATTGGTATGCACTCATGGCAGGAAGCAATTTTGGTAGCTGAGGTTGGGAGTCAAGCTCAAGTTCCTGTTATTTCATTTGCTTCACCAATCACTACCCCCTCATTGTTTTCAATTCGTTGGCCTTTCTTAATGCTAATGGCTCATAATAGTATTGCATATGTAAAATGCATTTCTGATATAGTTCATGCATACAATTGGCAAAGAGTTATAGTGATTTATGAAGAGGATGCATATGGTAGTGATTATGGGATGTTAGCACTTCTATCTGAGGCACTCCAAACTGTTGGTTCACAGATTGAGCTCTCTTTGGCTCTCCCTCCTTATTCTTCTTTGTCCCATCCAAGTGGGGTAGTTCAAGTAGAGTTGCTGAAGCTGCTTAACACTCAATCTCGTGTCTTCATAGTTCTACAGTCATCACTACCTATGGTAACTTGTTTGTTTGCAGAAGCTAAAAAGATGGAACTCTTGGATAGGGAAACAGCTTGGATAGTTCCAGAAAGCATAACTCACATGCTTGACTCTGTTAGTGAATCTGTCATTTCCTCCATGGAAGGTGTTTTAGGAATCAAGACTAACTACTCACAGAACACTACTGATTTTCAAAGTTTCCAAGTCCAGTTCAGGAAAAGTTTTCAAAAAGCAAATCCAGAAGAAGAAAACCCCCGACCTGGATTTTATGCATTGCAAGCATATGATAGCATTAGAGTTGTTACAATTGCTATGGAGACATTAAGCAATCATAACAGTAGTCCTAAGATATTTCTAAATGAAATGCTGTCTTCCAATTTCCTTGGTTTAAGTGGAGAAATAAAATTTGAACATCAGCAGACCTTGCCCTCTCCTATATTTAGGATTGTAAATGTGATTGGAAAGAGTTACAAAGAAATAGACTTTTGGAAAGAAGAGTATGGATTCTCCAAAACCCTTCACTTTGAATTAGCTGGTCAGGCAGTCAAAAATAATGAGGTCACCGGTCCAATAATTTGGCCTGGGAATTTAATGAGCACTCCAAAGGGTTGGAGAATGCCTACAAGATCAAAACCATTGAAAATTGGTGTTCCAAGTAGGACTCCGTTTGAAAAGTTTGTGAAGGTTGAGCATAATGAAAACTCAAATCAAACCAAGTATAGTGGATTCTGCATTGAAATTTTGGAAAAGATTCTAGATCTATTGCAGTATGATCTGCCATATGAAATAGTTCCTTTTAAAGGAAACTACACTGCACTGGTCTATCTTGTCTATAACAAGACTTTTGATGCTGTTGTTGGTGACATTACCATTGTGGCTGATAGAATGCAATATGTGGATTTCACACTGCCATATACAGAGTCAGGATTGTCAATGATAGTTCCAGCAAAATCTGAGGATACAGCTCTGATTTTTATGAAGCCCTTTACTTGGGAAATGTGGATGGTTACAGTTTCCATCCTCATTTACACCATGTTGGCAGTTTGGTACTTGGAGAGGGATTCCAATCCAGAATTCAATGGTCCATGGAAGAATCAGATTAGCATTGCTCTATGGTTTACTGTCTCGTCTCTATTATTTGCCCACACGGAGAGGATCCAGAGCAACTTCACTCGAATGGTGATTGTTGTGTGGCTCATCCTTGGTTCGATCCTAACCTCAAACTACACTGCTAATCTATCCTCAATGCTCACAGTTCAACAATTGCAACCAAATGTTAAAAACATTGACTCACTTAAAGGGAGCAATTCCAAAATCGGTTTCTCAGGTGATCCATTTGTCAGAAAATATCTAGAAAATGTGCTTCTTTTCAAATCAGAGAATATTGTCAAGTTAACTTCAACTACATTGAGGAGTTCAAAAGCAAGCTCATAG 4530 0.3865 MHFTSTNPQPLAGFWLSYLFISFLLIIGYQADPTNGDKKVISIGAIIDLNSRAGKEEKVAIELAAQNYNNNSKYHKLTLHFKDSGGVALRAISIAEEMIKIKKVEVIIGMHSWQEAILVAEVGSQAQVPVISFASPITTPSLFSFRWPFLMLMAHNSTAYVKCISDIVQAYNWKRVIVIYEEDAYGSDYGMFALLSEALHNVGSQIELSLALPPYSSLSNPSGVVQVELLKLLNTQSRVFIVLQSSLPMVTCLFAEAKKMELLDRETAWIVPESITHMLDSVSESVISSMEGVLGIKTYYSQNSTDFQSFQENPEEENPKPGFYALQAYDSIRVVTSAMETLRNHTSSPKIFLKEMLSSNFLGLSGKIKFEHQQTLPSPILRIVNVIGKSYKEIDFWTEEYGFSKTLSFELAGQAVKNNEVTSTTEGLAGPIIWPGNVMSTPKGWRMPTRAKPLKIAVPRKTPFEKFVKVEYNENSNQTMYSGFCIEIFEKVLHLLQYDLPYEIVPVNATYRDLVFLVYNKTFDAVVGDITILADRMQYVDFTLPYTESGLSIIVPAKSEDTALIFMKPFTWEMWMVTVSILIYTMLAVWYLERDSNPEFNCPWKNQISIALWFTVFSLLFAHRERIQSNLTRMVIVVWLILGLILTSSYTANLSSMLTVQQLQPNVKNIDSLIWSNSKLGYSSDEPYVRKYIENMLHFKSNNTIKIYMNNSYNENFKRNRVAAALIETPYEKVFISKNCGGYSAFKLAHRFGGLGFMFQKGSPITRDFSKAILQLLENGDMKSLEDKWLNNADECSTNITTNANGSLKLQSFWVLFAASAEATSNEKAVSIGVIIDLNSRVGKEEKVAIELAAQNYNNGSKYHKLSLHFNDSGGVALRAISIAEEMIKIKKVEVIIGMHSWQEAILVAEVGSQAQVPVISFASPITTPSLFSIRWPFLMLMAHNSIAYVKCISDIVHAYNWQRVIVIYEEDAYGSDYGMLALLSEALQTVGSQIELSLALPPYSSLSHPSGVVQVELLKLLNTQSRVFIVLQSSLPMVTCLFAEAKKMELLDRETAWIVPESITHMLDSVSESVISSMEGVLGIKTNYSQNTTDFQSFQVQFRKSFQKANPEEENPRPGFYALQAYDSIRVVTIAMETLSNHNSSPKIFLNEMLSSNFLGLSGEIKFEHQQTLPSPIFRIVNVIGKSYKEIDFWKEEYGFSKTLHFELAGQAVKNNEVTGPIIWPGNLMSTPKGWRMPTRSKPLKIGVPSRTPFEKFVKVEHNENSNQTKYSGFCIEILEKILDLLQYDLPYEIVPFKGNYTALVYLVYNKTFDAVVGDITIVADRMQYVDFTLPYTESGLSMIVPAKSEDTALIFMKPFTWEMWMVTVSILIYTMLAVWYLERDSNPEFNGPWKNQISIALWFTVSSLLFAHTERIQSNFTRMVIVVWLILGSILTSNYTANLSSMLTVQQLQPNVKNIDSLKGSNSKIGFSGDPFVRKYLENVLLFKSENIVKLTSTTLRSSKASS. 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04775 1509 Gene3D - 158 320 - -
Seca11g04775 1509 Gene3D - 948 1116 - -
Seca11g04775 1509 SUPERFAMILY Periplasmic binding protein-like I 39 445 IPR028082 -
Seca11g04775 1509 Gene3D - 455 562 - -
Seca11g04775 1509 Gene3D - 1246 1353 - -
Seca11g04775 1509 FunFam Glutamate receptor 563 702 - -
Seca11g04775 1509 FunFam Glutamate receptor 1244 1354 - -
Seca11g04775 1509 Pfam Receptor family ligand binding region 848 1185 IPR001828 -
Seca11g04775 1509 Pfam Receptor family ligand binding region 58 387 IPR001828 -
Seca11g04775 1509 Pfam Ligand-gated ion channel 792 819 IPR001320 GO:0015276|GO:0016020
Seca11g04775 1509 Gene3D - 334 454 - -
Seca11g04775 1509 Gene3D - 1130 1245 - -
Seca11g04775 1509 Pfam Ligand-gated ion channel 1453 1466 IPR001320 GO:0015276|GO:0016020
Seca11g04775 1509 FunFam Glutamate receptor 160 320 - -
Seca11g04775 1509 FunFam Glutamate receptor 453 563 - -
Seca11g04775 1509 FunFam Glutamate receptor 949 1117 - -
Seca11g04775 1509 Gene3D - 1354 1481 - -
Seca11g04775 1509 Gene3D - 563 697 - -
Seca11g04775 1509 CDD GluR_Plant 452 790 - -
Seca11g04775 1509 Pfam Bacterial extracellular solute-binding proteins, family 3 1269 1452 IPR001638 -
Seca11g04775 1509 SMART GluR_14 455 792 IPR001320 GO:0015276|GO:0016020
Seca11g04775 1509 SUPERFAMILY Periplasmic binding protein-like II 430 791 - -
Seca11g04775 1509 CDD PBP1_GABAb_receptor_plant 42 407 IPR044440 -
Seca11g04775 1509 Gene3D - 744 798 - -
Seca11g04775 1509 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 820 IPR015683 -
Seca11g04775 1509 Pfam Bacterial extracellular solute-binding proteins, family 3 478 791 IPR001638 -
Seca11g04775 1509 SUPERFAMILY Periplasmic binding protein-like II 1222 1458 - -
Seca11g04775 1509 SUPERFAMILY Periplasmic binding protein-like I 826 1236 IPR028082 -
Seca11g04775 1509 CDD PBP1_GABAb_receptor_plant 831 1205 IPR044440 -
Seca11g04775 1509 FunFam Glutamate receptor 1354 1492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04775 Seca-Chr11 136359076 136374287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04775 16 821 Ion Channels AT5G27100 31.111 8.99e-128 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04775 - - gmx:100818619 936.021