Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04773 ATGGGATATGAAGATGAAGATCATGATGAGCGTGTCACTCATGGAACAGCCCTTACGGTCATTCTCGCCGCAACTCTGTTTTTAGTTGGTATATTATTGCTCACTACCTTCCTCTGTTTCTATGCAAAACATCTCCTAAGACGCCAACAGAGAAGACGCCAAAACGAATTTCTCTACCGTATAAGACCTCAAATTGCACCCACAAATGTAGACTCACCAAATTCTGGGCTTGACCCTGTCATCATAGCCTCACTCCCTAGAATTTTGTACAAGCAAACGGATCAGTTCAGGCAAGGTGAAGTGATGGAGTGCTCTGTTTGTTTAACCACTATTGAGGAAGATGCAATGATTAGGGTGCTTCCGAATTGTAAGCATGTGTTCCATGTTGATTGTGTTGATATGTGGTTCAGTTCCAATAGCACTTGCCCTGTTTGTCGTGCCGTGGTTGAACTTGAACCCATGGTTTTGGACACACAGGTCCAAGTCCAACCCACTGCGCCAATATTAGTTGAGGATGATGGTGTGTCGTTGCAGGATGCAAATCATGAAGTGGAAATGGTGGGTTGTTCAGGCTTGAGAATTGCTTCTTTTCCTAGGATGGTTATTAGCAGGGAAAGGTCGAGAAAAGATCAGAGCTTTGATGAGTCTGTTTCAATAGAAGATGTAGAGAAGCCGTAA 678 0.4381 MGYEDEDHDERVTHGTALTVILAATLFLVGILLLTTFLCFYAKHLLRRQQRRRQNEFLYRIRPQIAPTNVDSPNSGLDPVIIASLPRILYKQTDQFRQGEVMECSVCLTTIEEDAMIRVLPNCKHVFHVDCVDMWFSSNSTCPVCRAVVELEPMVLDTQVQVQPTAPILVEDDGVSLQDANHEVEMVGCSGLRIASFPRMVISRERSRKDQSFDESVSIEDVEKP. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04773 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 150 IPR013083 -
Seca11g04773 225 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Seca11g04773 225 SUPERFAMILY RING/U-box 84 152 - -
Seca11g04773 225 Pfam Ring finger domain 103 146 IPR001841 -
Seca11g04773 225 SMART ring_2 104 145 IPR001841 -
Seca11g04773 225 CDD RING-H2_EL5-like 103 146 - -
Seca11g04773 225 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Seca11g04773 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04773 Seca-Chr11 136341333 136342010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04773 20 224 C3H Transcription Factor Family AT2G42360 35.981 3.06e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04773 K19038 - gmx:100779105 233.417