Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04760 ATGCAGGAAAGAGAACAAGCACTGAGGTCGTTCAAGAGTGGAAACACACCAATTCTAGTGGCAACGAAAGTTGCAGCACGTGGTCTCGATATTCCAAGGGTAGCACATGTGGTAAATTTTGATCTCCCCAATGACATTGATGATTATGTGCACAGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGAAACAGCCTTCTTCAATGACAGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACTTGGAATTGGAGAAATAATTATTGGAGAAATAAGTACCCTAACTGAGGCAACAAATCGTAGATGA 339 0.4189 MQEREQALRSFKSGNTPILVATKVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLETAFFNDSNLSLAKPLADLMQEANQEVLGIGEIIIGEISTLTEATNRR. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04760 112 CDD SF2_C_DEAD 2 69 - -
Seca11g04760 112 Pfam Helicase conserved C-terminal domain 2 60 IPR001650 -
Seca11g04760 112 Gene3D - 1 93 IPR027417 -
Seca11g04760 112 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 99 IPR001650 -
Seca11g04760 112 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 91 - -
Seca11g04760 112 SMART helicmild6 1 60 IPR001650 -
Seca11g04760 112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 90 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04760 Seca-Chr11 136085307 136085645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04760 2 91 Eukaryotic Initiation Factors Gene Family AT3G19760 37.778 6.52e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04760 K11594 - csin:114306398 167.162