Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04754 ATGGACGAACGTGGTGGGGAACGTGGTGGATTTGGCCGTGGTCGCCGCAAGGCTTCTGGAAGACGCGATGAAGAGGAGAAGTGGGTTCCAGTGACGAAGCTGGGTCGTCTTGTGAAAGAGGGTAAGATCCGAAGCCTTGAGCAGATCTACCTTCACTCACTCCCAATCAAGGAGCACCAAATCGTGGACACCTTGGTTGGTCCCTCCCTCAAGGATGAGGTCATGAAAATCATGCATGTTCAGAAGCAGACCCGTGCCGGTCAGCGAACTCGGTTCAAGGCCTTCGTTGTCGTTGGTGACGGCAATGACCACGTTGGTCTTGATGTCAAGTGCAGCAAGGAAGTTTCCACCGCCATTTGCGGTGCCATCATCTTGGCTAAGCTCTCCGTCATTCCCGTGAGAAGAGGTTACTGGGGTAACAAGATTGGAAAGCCCCATATTGTTCCCTACAAGGTCACTGGAAAGTGTGGTTCAACCATTATCCGCATGGTCCCCGCCCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTCTTGCAATTTGCAGGAATTGAGGATGTCTTCACCTCCTCCAGAGGATCCACTAAGACTCTTGGAAATTTCGTAAAGGCTACTTTTGATTGTCTGTTGAAAATCTACAGGTTCCTAACGCCCGACTTCTGGAGGGAGACTCGTTTCTCCAAATCTCCATTCCAAGAGTACACTGATCTATTGGCTAAGCCGACAGGAAAGGCCCTGATCCTTGAGGAGGAAAGGGTGGATGCTTGA 777 0.5109 MDERGGERGGFGRGRRKASGRRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMHVQKQTRAGQRTRFKAFVVVGDGNDHVGLDVKCSKEVSTAICGAIILAKLSVIPVRRGYWGNKIGKPHIVPYKVTGKCGSTIIRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKIYRFLTPDFWRETRFSKSPFQEYTDLLAKPTGKALILEEERVDA. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04754 258 Gene3D - 27 132 - -
Seca11g04754 258 FunFam 40S ribosomal protein S2 27 132 - -
Seca11g04754 258 FunFam 40S ribosomal protein S2 133 226 - -
Seca11g04754 258 SUPERFAMILY dsRNA-binding domain-like 66 135 - -
Seca11g04754 258 Pfam Ribosomal protein S5, N-terminal domain 70 134 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca11g04754 258 NCBIfam 30S ribosomal protein S5 23 230 IPR005711 GO:0003735|GO:0006412|GO:0015935
Seca11g04754 258 PANTHER RIBOSOMAL S SUBUNIT 21 214 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca11g04754 258 Pfam Ribosomal protein S5, C-terminal domain 154 225 IPR005324 GO:0003735|GO:0005840|GO:0006412
Seca11g04754 258 MobiDBLite consensus disorder prediction 1 25 - -
Seca11g04754 258 Gene3D - 133 225 IPR014721 -
Seca11g04754 258 ProSiteProfiles S5 double stranded RNA-binding domain profile. 70 133 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca11g04754 258 SUPERFAMILY Ribosomal protein S5 domain 2-like 148 226 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04754 Seca-Chr11 135716463 135717804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04754 24 246 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 85.202 2.60e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04754 K02981 - gmx:100797105 450.669