Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04752 ATGGCGGGAAATCCCTCAACACCGGGTCCCTCTTCGCCAACGTCTCCCCCTGTTGGTTTCAACACGGACCAGCTTCCTCACATCCACACCAACCGTGCCTCTGAAGACGATGAAGCCTCCGTTGATCCTGACATCATACGAGACGAAGAACAACCCGACGAAGATGAAGAAGAAGGAGATGATCTTTTCAATGAGCGCTTCATGGATGATTATAGAGGGATGGAGGAAGCTGACCAGTACGAATCCGTTGGGCTGGATGACTCGTTGGAGGATGATAGGGATTTTGATCAGATCATGGAAGATCGAAGGGCTGCAGAGGTGGAGCTCGACAACCGTGATGGTCGCGTTTCCAATCGCAACAAACTTCCTCAGCTTCTGCACGACCAGGATACAGATGATGACAGTTATAGGCCTTCTAAAAGGGCTCGACCTGATTTCAGGCCTCCAATTCCAAGCGATGACGATCTTGATGGGATGCAAAGTTCACCTGGAAGGTCACAACGAGGACACTCAAGAGAAGATGTTCCAATGACTGATCAAACTGAGGATGATCGATATGAGGATGAATATGATGATGAAGGTGAGTACCAGATGTACCATGTTCAAGGTACACTCAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCCGGAAATTCAAGGATTTCTTGCTCACATATGTCAATCCGAAAAATGAACATGGTCAATTTGAATATGTCCGCCTGATAAATGAGATGTTGTCAGTTATTGTTTCCTTGAATTGCAGCTACAAGTGTAGTTTGGAGATTGATTACAAACAATTTTTCTATCTACATCACAACATTGCCTTATGGCTGGCTGATGCACCTCAGTCTGTTTTAGAAGTAATGGAAGATGTTGCCAAAAGCGTTGTCTTTCAACTCCATCCAAATTACAAAAATATACATCAAAAGATTTATGTTCGCATAACAAACTTACCAGTATATGATCAGATTCGAAATATTAGGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACCAGGTGCTCTGGAGTTTTCCCCCAATTGCAACAGGTGAAGTATGACTGTAACAAATGTGGGGCCATTTTGAGACCTTTTTCACAGAATTCCTATTCAGAGGTTAAAGTTGGATCCTGTCCCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAGCAGACAATTTACCGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGGACAGTTCCTGCTGGTCGACTTCCAAGATACAAGGAAGTGATACTACTGAATGATCTGATTGACTGTGCTCGACCCAGGGAAGAGATTGAGGTCACAGGTATTTATACTAATGACTTTGACTTATCCTTAAACATAAAGAATGGATTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATCATGTTACGAAGAAGCAAGATCTGTTCTCTTCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATCGGAGAAAGGATTGTAAAGTCTATTGCTCCATCAATATATGGTCATGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGAAAGCATCGACTGCGAGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTCAAGTATGTTGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCACAAGGATCCAGTCACTAGGGAGTGGACCCTTGAGGGGGGAGCCCTTGTTCTAGCTGACAAAGGAATTTGTCTCATTGATGAGTTTGACAAGATGAATGATCAGGATAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCGGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCTGCACATCCTATCGGAGGAAGATATGATTCCTCAAAAACATTTTCCTCAAATGTTGAATTGACAGATCCTATTATATCTCGTTTTGACATCCTCTGTGTTGTGAAGGATGTGGTTGATCCGGTTACTGATGAAATGCTTACAAAGTTTGTAGTTGACAGTCACTTCAAGTCACAACCTAAGGGGGCTATTAAAGATGATAAGTCCTTGAGTGAGTCCCAAGATGTTTATGCAGCTGCCATGCCAGCTGATCCCGAGATACTTCCTCAAGACCTACTGAAGAAGTACATTACATATGCGAAGTTGAATATTTTTCCAAGGTTGCATGATGCTGATTTGGATAAACTGACACATGTATATGCTGAACTGCGGAGGGAATCTTCACACGGGCAAGGAGTCCCCATTGCCGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCTAGAATGCATCTCAGACAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTCGATTCATTCATTTCAACTCAAAAGTTTGGTGTGCAGAAAGCTCTGCAAAAGGTATTGAAAGAGATTCTGAACCTGCCTCGGAGTTCTATTAAATCCAGACACTCTTTGGCATCTATTTTTGTGACAAATTACCATTTCTTTTTATTTGCCTATCTATCACTTTGGGATACTTTAGAGTATATGACTTTCAAGAAGGACTATAATGAATTGCTTCTTTATCTTCTCCGCGAGCTTGTAAAGAATGCTTTGCATTTCGAAGAAATTGTCACCGGATCTGCTTCAGGTCTTACGCATGTAGATGTCAAAATAGATGATCTCTACAACAAGGCTAAAGAGCATGAAATATATGATTTGAAACCCTTCTTCAGTAGCAGCCACTTTTCTAGGGCCAATTTTGTATTAGATGAAGAACGAGGAGTGATCAGACATCACCTTGCTACATGA 2943 0.4247 MAGNPSTPGPSSPTSPPVGFNTDQLPHIHTNRASEDDEASVDPDIIRDEEQPDEDEEEGDDLFNERFMDDYRGMEEADQYESVGLDDSLEDDRDFDQIMEDRRAAEVELDNRDGRVSNRNKLPQLLHDQDTDDDSYRPSKRARPDFRPPIPSDDDLDGMQSSPGRSQRGHSREDVPMTDQTEDDRYEDEYDDEGEYQMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGQFEYVRLINEMLSVIVSLNCSYKCSLEIDYKQFFYLHHNIALWLADAPQSVLEVMEDVAKSVVFQLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRCSGVFPQLQQVKYDCNKCGAILRPFSQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGTVPAGRLPRYKEVILLNDLIDCARPREEIEVTGIYTNDFDLSLNIKNGFPVFATVVEANHVTKKQDLFSSYKLTQEDKEEIENLGKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAAHPIGGRYDSSKTFSSNVELTDPIISRFDILCVVKDVVDPVTDEMLTKFVVDSHFKSQPKGAIKDDKSLSESQDVYAAAMPADPEILPQDLLKKYITYAKLNIFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKVLKEILNLPRSSIKSRHSLASIFVTNYHFFLFAYLSLWDTLEYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSASGLTHVDVKIDDLYNKAKEHEIYDLKPFFSSSHFSRANFVLDEERGVIRHHLAT. 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 359 371 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 455 466 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 336 353 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 470 481 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 394 408 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g04752 980 MobiDBLite consensus disorder prediction 65 79 - -
Seca11g04752 980 Pfam MCM OB domain 326 452 IPR033762 -
Seca11g04752 980 MobiDBLite consensus disorder prediction 41 64 - -
Seca11g04752 980 MobiDBLite consensus disorder prediction 95 117 - -
Seca11g04752 980 Gene3D - 354 404 - -
Seca11g04752 980 MobiDBLite consensus disorder prediction 80 94 - -
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein family signature 686 694 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein family signature 635 648 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein family signature 547 562 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein family signature 607 621 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 PRINTS Mini-chromosome maintenance (MCM) protein family signature 659 671 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 FunFam DNA helicase 486 858 - -
Seca11g04752 980 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 205 913 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 Gene3D - 212 323 - -
Seca11g04752 980 ProSiteProfiles MCM family domain profile. 506 712 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 CDD MCM2 509 835 - -
Seca11g04752 980 Gene3D - 327 452 IPR012340 -
Seca11g04752 980 Pfam MCM P-loop domain 494 716 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 Pfam MCM AAA-lid domain 752 836 IPR041562 -
Seca11g04752 980 SUPERFAMILY Nucleic acid-binding proteins 221 475 IPR012340 -
Seca11g04752 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 851 IPR027417 -
Seca11g04752 980 Pfam MCM N-terminal domain 220 320 IPR027925 -
Seca11g04752 980 MobiDBLite consensus disorder prediction 125 152 - -
Seca11g04752 980 Pfam Mini-chromosome maintenance protein 2 35 191 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca11g04752 980 MobiDBLite consensus disorder prediction 1 193 - -
Seca11g04752 980 ProSitePatterns MCM family signature. 615 623 IPR018525 GO:0003677|GO:0005524|GO:0006260
Seca11g04752 980 SMART mcm 323 837 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca11g04752 980 FunFam DNA helicase 212 323 - -
Seca11g04752 980 Gene3D - 486 857 IPR027417 -
Seca11g04752 980 FunFam DNA helicase 354 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04752 Seca-Chr11 135694938 135700250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04752 19 975 Core DNA Replication Machinery Family AT1G44900 71.917 0.0 1319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04752 K02540 - gmx:100799441 1568.13