Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04733 ATGGTTTACTCCTTCTGTGACAAAAGCTCTTTATCTGGCTATGATGGTTTCAATACCACTTTGCATAACCTTGGAACTTCCAGTGGTGTTTTGGGAGGTGGGTCGTCATCATCTCATTCATTGGTTTTTGAGAGTGAAAAGGGAGAGTTGGTGAAGTGCCCTTCAACTGCAAGGGTAGGAAAGAATGAGATTTCTGAGGCCAAAGCCTTAGCTGCTTTGAAGAGCCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAATGGTCATCTTGCAACACTACGTGGTCTTGTGCCCTCCACTGAAAAGATGGATAAAGCCACATTACTGGCTGAAGTAATTAAACAAGTGAAGGAATTGAAGAAGAATGCAGTGGAAGCAAGCAAAGGTTATCTCATCCCAATGGATGTTGATGAAGTGAAAGTTGAACCATATGATGAAGGAGGAGATGGACCCATGTCTTATATGGCAACTATTTGCTGTGATTACAGACCTGAGATACTATCAGACATAAGACAGACACTTAAAGCCCTTCAACTACAATTGGTGAAGGCAGAGATATCAACATTGGAAGGTAGGATGAAGAATGTGTTTGTCTTTACATGTTGCAAAAAGGAAAATGTTAATACTGAGGCATGTCAAGCTCTTGCAAGTAATGTTCACCAGGCACTAGATTCTGTGCTGGAAAAGGCTTCTAACTCAATGGAGTTCTCACTCAGAACGTCTCATGCAAGCAAGCGGAGAAGACTATGCTTTTTTGAAACATCTACTTCCTCATTCAACCATGAATCTTGTTCATTCTGA 804 0.4167 MVYSFCDKSSLSGYDGFNTTLHNLGTSSGVLGGGSSSSHSLVFESEKGELVKCPSTARVGKNEISEAKALAALKSHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVIKQVKELKKNAVEASKGYLIPMDVDEVKVEPYDEGGDGPMSYMATICCDYRPEILSDIRQTLKALQLQLVKAEISTLEGRMKNVFVFTCCKKENVNTEACQALASNVHQALDSVLEKASNSMEFSLRTSHASKRRRLCFFETSTSSFNHESCSF. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04733 267 SMART finulus 77 126 IPR011598 GO:0046983
Seca11g04733 267 Coils Coil 168 188 - -
Seca11g04733 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Seca11g04733 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 123 IPR036638 GO:0046983
Seca11g04733 267 CDD ACT_UUR-ACR-like 158 231 - -
Seca11g04733 267 Pfam Helix-loop-helix DNA-binding domain 75 120 IPR011598 GO:0046983
Seca11g04733 267 Coils Coil 110 130 - -
Seca11g04733 267 Gene3D - 67 129 IPR036638 GO:0046983
Seca11g04733 267 PANTHER TRANSCRIPTION FACTOR BHLH30 32 254 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04733 Seca-Chr11 135266695 135270405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04733 13 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.308 4.05e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g04733 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04733 - - gmx:100804756 372.089