Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04729 ATGCTCAAAGAAACCTTCATTTTCCTATCACTACTTTTATTAGTATACAAATATGGTCCCATTCTCTACTTCGACATAACCTCACACACACCCAAGCTATACACCGATTCTTGCGGACTCATATTCAACACACCCTCAGGTACAGGCCTTTTTGGTCGCAGCTGCAATGATCCCAGTTATGAGCTTCTTTGTGATGAGAACAACAAAACAGTATTGTACTTAAACTATGGCAGGCACTTCGTGCAAGCCATTACTTCAGTCAACAATAATGGCACCCTCAAATTCATGATTGGTGGACTTGACAACAATAATTGCCCCACAATCACTCTTCCTTTCACATACAGTAACTTCACCAAATACAGTTCTGAACAAGAAAACAAACTAGCCACCGACAATAACATATATTATGATGATGGCATAGTATTGCTCAGCTGCAAGAAGAAACCTCCTAGTTCATTTCCTTGTGCAAGTGGAGCCACGGAGAGGCCTTATTCTTATGTTCTGCCACGGTATGCAGAGGTATCTGATGTGGGTGAGTCATGTAGTGTGGACTTGATGATAAGGGTGTTGCCTTGGGGACCAGTGACATGCAATAAGAACTGTTCTTATCCAGAGATACAGAGTGAGGAGGTGAATGGGATTCAGCTTAAATGGCGAGCCAACCGTTGTGGGGTGTGGGATGGTGGGGATGGAAGTTGCTTCTTGGACAACACCACCAACATGGTCTTCTGCAATTCCAAAGCAGGGATTTTGACAAGTGTTTTAAACTTTCTTGGAGAAGGGCTCAATGCTGGAGTAATGATCATCCCAATTTATAGCTTACTCTCATGGTTTGCATTAAGAACTGTACTCGGTCCCCCATGTGTGGTTGCATTCTTGATTTATAAATGGAAAAAGAGGGATCAATCTGCGTGTGATGAAGTTGAGGATTTCCTCCAAAATCACAGCAATTTAGTACCTATCAAGTACTCTTACTCTGACATAAAGAAAATGACCAAAGGTTTCAAGCACAAGTTAGGTGAAGGAGGCTATGGTTATGTCTACAAAGGGAAGCTTCGAAGTAAACGTGATGTTGCTGTGAAATTATTATGCAAATCCAAACCAAATGACGAACAGTTCATTAATGAAGTTGCTACTATTGGGAAAATTCGTCACACCAATGTGGTGCGTTTAATTGGATTTTGTGCAGAAAGAACCAAGCGTGCTCTTGTTTATGAGTACATGCCTAATGGTTCTCTTGACAAGCACATATTCTCACAACAACAGGGGAATAATATGTCCATAACCTATGAGAAAATCTTTAATATCTCTCTTGGGGTGGCTCGTGGAATCCAATATTTACATGAAGGTTGTGATATGCAAATTCTACATTTTGATATCAAACCTCACAACATTCTTCTTGATGAGAATTTCAATCCAAAGATCTCTGATTTTGGATTGGCAAAGTTATATCCAATAGATGATGATAGCATTGTATCTCTAACAGTGGCAAGAGGAACAATGGGATACATGGCACCTGAATTGCTATACAAAAACATTGGAGGTGTTTCATACAAAGCTGATGTTTATAGCTTTGGGATGTTATTGATGGAAATGGCAGGTAGAAGGAAGAACTTAAATGCTATGGAGTATTCTTGGCAGAGTTACTTTTCTAAATGGGTTTATGACCAATTTGAGGAAACTATAGATTTGAGTAATGCCACAGAAGAGGAAAAGGTGATAGCAAAGAAGATGATAATTATAGGTTTACATTGCATACAGATGAACCCAAATGATCGTCCTTCAATGAATGAGGTGATAAAGATGCTTGAAGGAGAATCTGAGTTCCAAGATGTTCTTCCACCCTAA 1848 0.3972 MLKETFIFLSLLLLVYKYGPILYFDITSHTPKLYTDSCGLIFNTPSGTGLFGRSCNDPSYELLCDENNKTVLYLNYGRHFVQAITSVNNNGTLKFMIGGLDNNNCPTITLPFTYSNFTKYSSEQENKLATDNNIYYDDGIVLLSCKKKPPSSFPCASGATERPYSYVLPRYAEVSDVGESCSVDLMIRVLPWGPVTCNKNCSYPEIQSEEVNGIQLKWRANRCGVWDGGDGSCFLDNTTNMVFCNSKAGILTSVLNFLGEGLNAGVMIIPIYSLLSWFALRTVLGPPCVVAFLIYKWKKRDQSACDEVEDFLQNHSNLVPIKYSYSDIKKMTKGFKHKLGEGGYGYVYKGKLRSKRDVAVKLLCKSKPNDEQFINEVATIGKIRHTNVVRLIGFCAERTKRALVYEYMPNGSLDKHIFSQQQGNNMSITYEKIFNISLGVARGIQYLHEGCDMQILHFDIKPHNILLDENFNPKISDFGLAKLYPIDDDSIVSLTVARGTMGYMAPELLYKNIGGVSYKADVYSFGMLLMEMAGRRKNLNAMEYSWQSYFSKWVYDQFEETIDLSNATEEEKVIAKKMIIIGLHCIQMNPNDRPSMNEVIKMLEGESEFQDVLPP. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04729 615 SUPERFAMILY Protein kinase-like (PK-like) 315 604 IPR011009 -
Seca11g04729 615 Pfam Protein kinase domain 336 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04729 615 ProSiteProfiles Protein kinase domain profile. 333 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04729 615 FunFam PR5-like receptor kinase 408 613 - -
Seca11g04729 615 Gene3D Phosphorylase Kinase; domain 1 295 407 - -
Seca11g04729 615 Gene3D Transferase(Phosphotransferase) domain 1 408 612 - -
Seca11g04729 615 FunFam serine/threonine-protein kinase PBS1-like 300 407 - -
Seca11g04729 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 303 607 IPR045874 GO:0004672
Seca11g04729 615 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Seca11g04729 615 SMART serkin_6 333 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04729 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Seca11g04729 615 CDD STKc_IRAK 339 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04729 Seca-Chr11 135224906 135228135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04729 322 614 Receptor kinase-like Gene Family AT5G38280 52.632 4.16e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca11g04729 Pkinase 2.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04729 - - tpra:123914142 577.4