Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04713 ATGTCTATGACTCCATCCGAGAGCGAAAGCAAGAAGAAGAAGCATCGCAGTCGCAAACATGAAGAAAGTGAAGGACAAGAAGAAGCCAAGGAGCAGAAAGAGGACCTCTTCATGATCAAACCTCAGAAGTTTACAACCCCAATCGACACCTCCGAATGGCCCATTCTCCTAAAAAACTACGAGCGCCTCAACGTACGCACCGGACACTACACCCCTCTCCCCTCCGGTTACTCCCCTCTCAAACGCCCTCTCACTGAGTACCTCAAGTACGGTGTTCTCAACCTTGACAAGCCCGCTAACCCTTCTTCCCATGAGGTTGTCGCTTGGATCAAACGTATCCTCCGTGTCGAAAAAACCGGTCACAGCGGCACCCTCGACCCCAAAGTCACTGGAAACCTCATTGTCTGCATTGACAGAGCCACCCGCTTGGTCAAGTCCCAACAGGGTGCTGGCAAAGAGTACGTTTGTGTTGCTCGCTTGCACTCCTCTGTCCCTGATGTCTCCAAGGTTGCTCGCGCCCTCGAGACCCTCACCGGTGCAGTGTTTCAACGGCCACCGTTGATTTCCGCCGTCAAGCGCCAGCTCAGGATCAGGACCATCTATGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCATTTGGTTGTTTTTTGGATTTCCTGTGAGGCTGGTACTTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTGCTTGGTGTGGGTGGCCACATGCAGGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAACATGGTCTCTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTACCGGGATGAGACTTATTTGAGGAGGGTTGTCATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTCAGGTTTGAGAATGATATTGAGGTAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGTGAAGCTATTGCTCTCGGGATTGCTGAGATGACTACTGCTGTCATGGCAACTTGTGATCATGGTGTGGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACCTATCCCAGGAAATGGGGTTTGGGCCCCAGGGCTTCCATGAAGAAGAAAATGATTGCTGAAGGGAAGCTGGATAAGCATGGCAAGCCAAATGAGAAAACTCCCCAAGAGTGGCTGAGGAATCTGGTTTTGCCCACTGGTGGGGATAGCATGATTGCAGGTATGGCTGCTGCGGATGAACCTGAAAAGGCCAAGAAAGAGACTTCTGTAAAAGAGGGTGAGAAGGATGCAGATGGGGAAGGGCGTAAAAGAAAGAAACACCAAAGTACTGATAGCCCTGTCTCCCTTCCTGCTAAGAAGGCGAAAGTTGATGAAGTTGAAGTGGTCGAGAAGCAGGAAACAGTGAAGCTGAAGAAAGTAAATGATGAAGCTGTGGAGGTTGAAGTTGAGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAAAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAGCTGAAAAGAAGAAGAAGAAGCATAAGGAAAAGGTTGAAGAGGGTTCTCCAGAGTTAGACAAATCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGACACTGAAGATAATGCTGCTGAAATTAGTAATGGAAAGGATGACAATAAAGCGGATAGGAGTGAAAAGAAGCAAAAGAAAAAGAAAAACAAAGATGCCAAGGAAGAATAG 1794 0.4721 MSMTPSESESKKKKHRSRKHEESEGQEEAKEQKEDLFMIKPQKFTTPIDTSEWPILLKNYERLNVRTGHYTPLPSGYSPLKRPLTEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMIAEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGMAAADEPEKAKKETSVKEGEKDADGEGRKRKKHQSTDSPVSLPAKKAKVDEVEVVEKQETVKLKKVNDEAVEVEVEKKEKKKKKKKDKENGEVASSDEEKAEKKKKKHKEKVEEGSPELDKSEKKKKKKKDKDTEDNAAEISNGKDDNKADRSEKKQKKKKNKDAKEE. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04713 597 SUPERFAMILY Pseudouridine synthase 50 295 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca11g04713 597 Gene3D Pseudouridine synthase 83 289 - -
Seca11g04713 597 Pfam TruB family pseudouridylate synthase (N terminal domain) 111 227 IPR002501 GO:0006396
Seca11g04713 597 SMART pua_5 298 372 IPR002478 GO:0003723
Seca11g04713 597 FunFam H/ACA ribonucleoprotein complex subunit CBF5 83 289 - -
Seca11g04713 597 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 57 382 IPR004802 GO:0006396
Seca11g04713 597 ProSiteProfiles PUA domain profile. 297 372 - -
Seca11g04713 597 CDD PUA_Cbf5 296 370 - -
Seca11g04713 597 Coils Coil 577 597 - -
Seca11g04713 597 MobiDBLite consensus disorder prediction 19 33 - -
Seca11g04713 597 SMART DKCLD_2 49 107 IPR012960 -
Seca11g04713 597 NCBIfam uncharacterized domain 2 292 369 IPR004521 GO:0003723
Seca11g04713 597 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 568 IPR004802 GO:0006396
Seca11g04713 597 MobiDBLite consensus disorder prediction 1 33 - -
Seca11g04713 597 MobiDBLite consensus disorder prediction 433 597 - -
Seca11g04713 597 Coils Coil 492 519 - -
Seca11g04713 597 Pfam PUA domain 298 370 IPR002478 GO:0003723
Seca11g04713 597 CDD PseudoU_synth_hDyskerin 89 271 - -
Seca11g04713 597 MobiDBLite consensus disorder prediction 434 465 - -
Seca11g04713 597 MobiDBLite consensus disorder prediction 473 597 - -
Seca11g04713 597 Gene3D PUA domain 50 381 IPR036974 GO:0003723
Seca11g04713 597 Pfam DKCLD (NUC011) domain 50 107 IPR012960 -
Seca11g04713 597 Pfam tRNA pseudouridylate synthase B C-terminal domain 228 294 IPR032819 -
Seca11g04713 597 SUPERFAMILY PUA domain-like 297 378 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04713 Seca-Chr11 134967359 134969152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04713 8 512 NAC Transcription Factor Family AT3G57150 76.832 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04713 K11131 - gmx:100806355 877.085