Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04709 ATGGAAGGAGGAGGAGATGCTCCACCTGCTGACACCGTCATGTCGGATGCGGCGCCTCCGCCTCAGCCCGACCCTCAACAACAGCATCAGCAGCAGCCGGCGGTGTCCATGGGGATCGAGAATATTCCGGCAACCCTTAGCCACGGTGGCAGGTTCATTCAGTACAACATATTCGGTAACATATTCGAAGTAACCGCGAAATACAAGCCCCCTATCATGCCCATAGGAAAAGGAGCTTACGGTATCGTCTGTTCGGCTCTGAATTCGGAGACGAATGAGCATGTTGCCATCAAGAAGATTGCCAATGCTTTTGACAACAAAATTGATGCCAAGAGGACCCTCCGTGAAATCAAGCTGCTTCGCCACATGGATCATGAAAACGTGGTCGCAATCAGGGATATAGTGCCACCACCTCAAAGGGAGGTGTTCAATGATGTTTACATTGCATATGAGCTAATGGACACTGACCTTCACCAAATCATTCGATCTAATCAAGCATTATCAGAGGAACACTGTCAGTATTTTCTCTATCAAATCCTTCGTGGGTTGAAGTACATACATTCTGCAAATGTGCTGCATAGGGACTTAAAACCTAGCAACCTTCTCCTGAATGCCAACTGTGACTTAAAAATTTGTGATTTTGGACTGGCTCGTGTCACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTAAACTCATCTGATTACACAGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTGATGGATCGAAAGCCTTTATTTCCTGGCAGAGATCATGTGCATCAGTTGCGTCTATTGATGGAGCTGATTGGCACCCCATCAGAAGCTGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATACATTAGGCAACTACCTCTTTACCGCCGCCAATCTTTCCAAGAAAAGTTTCCGCATGTCCATCCTGAAGCTATAGATCTTGTTGAAAAAATGTTGACTTTTGATCCCAGACAAAGAATTACTGGTGAGTTTTATTTGCATGAGGCTCTGTATTCTATGCTTAAAGTTGAAGATGCACTGGCACACCCCTACTTAACATCTCTGCATGACATCAGTGATGAACCTGTGTGCATGACTCCCTTCAGCTTTGACTTTGAACAACATGCTTTGACTGAGGAACAGATGAAAGAACTCATATACCGAGAGGCTCTAGCATTTAACCCTGAGTATCAGCAGTAG 1248 0.4463 MEGGGDAPPADTVMSDAAPPPQPDPQQQHQQQPAVSMGIENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREVFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPLYRRQSFQEKFPHVHPEAIDLVEKMLTFDPRQRITGEFYLHEALYSMLKVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04709 415 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04709 415 CDD STKc_TEY_MAPK 62 411 - -
Seca11g04709 415 ProSitePatterns Protein kinases ATP-binding region signature. 75 99 IPR017441 GO:0005524
Seca11g04709 415 ProSitePatterns MAP kinase signature. 104 207 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca11g04709 415 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g04709 415 Pfam Protein kinase domain 74 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04709 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Seca11g04709 415 Gene3D Transferase(Phosphotransferase) domain 1 153 395 - -
Seca11g04709 415 Gene3D Phosphorylase Kinase; domain 1 52 405 - -
Seca11g04709 415 FunFam Mitogen-activated protein kinase 153 395 - -
Seca11g04709 415 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 67 369 - -
Seca11g04709 415 FunFam Mitogen-activated protein kinase 54 163 - -
Seca11g04709 415 ProSiteProfiles Protein kinase domain profile. 69 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04709 415 SUPERFAMILY Protein kinase-like (PK-like) 74 376 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04709 Seca-Chr11 134916087 134921467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04709 1 415 MAP Kinase Gene Family AT2G43790 83.493 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca11g04709 Pkinase 3.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04709 K14512 - gmx:100805830 753.051