Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04690 ATGGTTAACATAGGTGAGGAGCCATGTATTAATTTAGATGATGACAGAGATGATAATGATAGTTATGGTGTTAGCATTGATGAAAGTGTTCATGGAGAGGACAGTGGTGTAGGGGGTCAAAATGAGCAGGGAGAACTGGTTTCACCAGATGAAAAAGTTAGACAGCTATTAGACCTTACAGGTGATGATATACGAATGCTTGAATTTGGTAGTGAACATGAGGCATGTATATTTTATGAGACATATGCTAAGTCTATTGGGTTTTCTGTGAGGAAAGATGATGTAACTAGAGATTCTAAAGGTCAGGTGGTAATGCGACAAATCGTATGCAACAGAGAGGGTTTGAGGAATAAAAAGCACTTCAGGAGGGTTGACAGAAAAAGACCCCATAAACCAATAACTCGCACAAAGTGTCCAGCTAAGTTGAGGGTGCATTATGATTTCAAGAATTCAAAATGGAAAGTGGTTTCTTTTGTGGAGACCCATAATCACGATCTAACCCCAGCAATGTATAGGCACCTAATGCCTACATACCGTGTTATTTCTGATGCGGACAAAGCTCAGGTGGATAGCTTGCACTCAAGTGGGGTTAAGACATGTCATATAATGGGATATATGCTGTCACAAAAAGGGGGATATGGTAAACTTGGTTTTTGTAAGAAGGATTTGTATAATTATATAGATCGCATAAAGCGCCTTAAGATTAAGAGTGGAGATGCACGGGCTGCATTGAGCTATCTACAAGGCAAGGCAGATAATGACCCAGTGCTATATTCGAGTTTTGAAACTACTGATGATGGTAAATTAAAGCACCTATTTTGGGCAGATGGATGCAGCATAGCTGATTATATGTGCTTTGGTGATGTTGTTGCATTTGACGCCAGCTACAAGAAGAACAAGTACAACAAACCCCTAGTTATATTCTCTGTGCAAAATAGACCACCTAAAGCAGTGGTAACAGATGGAGATGCTGCTATGAGAGAGGCTATAAAGACTGTGTTTCCGAATGCTTCACATCGCCTTTGTGCATGGCATTTGCACAAGAATGCATGTGAGAATGTGAAGAATTCTCCTTTTCTAGAAGATTTCAAGAAAGCAATGTACTCTAACTTTACCCCAGATGAGTTTGAAGAATTTTGGCACAAAATGGTGGTGAAACATGGTCTTCAGGGGAATAAATGGGTTTCCAAATCTTACCAAAATAAGGCATTGTGGGCCACTGCGTACTTGCGTGATAAATTTTTTGGTCGTATAAGGACCACTTCTCAATGTGAAGCAATTAACTCATTGATCAAGTCTTATGTTGAGAAGAAAAATAGCATTCTTGAATTCTTGCACAATTTTGAGAAAGTTTTGAAGGAATATAGGAACAATGAGCTAATGGCAGATTTCAAGTCTCTTTTTACTGAACCTGTTTTGACCACATATCTGAACAAGATTGAGCGTCAAGCTGCACAAATTTTCACTCAAGAAATTTTTAAAGAGGTGAAGAATGAGATTGAAGGATCTGGTGCATTTAATGTTGTTGAGCGAGTTGAAAATACATCCCAAGTGACATATAAGCTTAATAAATATTGTAAGCCAGACCGTAAAATTTGTGTTGCTTATGATATTTTGAAGTCAGAATTTCTCTGTGATTGTAAACTGTTTCAGTCTCGTGGCATTCCATTTTGTCATGTTATTTGTGCTATGAAACATGAGCACATGGACCACTTTCCAAACAGTTTGATTTGTAAAAGGTGGACTAAGACAGCTAAAAGTGAGTACATTTCAGCAGCAAATTCAGAGGAATTGGAATCCGATACAATGACTGTTGCTCGTTTTGCATCTCTAGTTGCTTCTTGCAATAGACTTTGTGAGATTGCCTCAAAAAGTAGTGAAACATTCAAGTGGGTAAGAGATGAGATCTTCAAGCTTATTAATAAGATAGAGAAAAAGGGTAAAACAAAGACCAAAGATAGCTCTTCTTTTGAAGATGTCCATGATCCGGATGTGGTCAAAACCAAGGGTGCTCCAACAAAGAAAAATCATGGGAGGAAGAGGAAACGATGCTCTAACTGTAACAGAACTGGACATATTAAAAAAAGATGTCCAAGGCTTATTGCTGAAGTCAATCGAACTGTAAAAAATGATGATGTAAGATCTGTTGATATTTTTTAA 2160 0.3801 MVNIGEEPCINLDDDRDDNDSYGVSIDESVHGEDSGVGGQNEQGELVSPDEKVRQLLDLTGDDIRMLEFGSEHEACIFYETYAKSIGFSVRKDDVTRDSKGQVVMRQIVCNREGLRNKKHFRRVDRKRPHKPITRTKCPAKLRVHYDFKNSKWKVVSFVETHNHDLTPAMYRHLMPTYRVISDADKAQVDSLHSSGVKTCHIMGYMLSQKGGYGKLGFCKKDLYNYIDRIKRLKIKSGDARAALSYLQGKADNDPVLYSSFETTDDGKLKHLFWADGCSIADYMCFGDVVAFDASYKKNKYNKPLVIFSVQNRPPKAVVTDGDAAMREAIKTVFPNASHRLCAWHLHKNACENVKNSPFLEDFKKAMYSNFTPDEFEEFWHKMVVKHGLQGNKWVSKSYQNKALWATAYLRDKFFGRIRTTSQCEAINSLIKSYVEKKNSILEFLHNFEKVLKEYRNNELMADFKSLFTEPVLTTYLNKIERQAAQIFTQEIFKEVKNEIEGSGAFNVVERVENTSQVTYKLNKYCKPDRKICVAYDILKSEFLCDCKLFQSRGIPFCHVICAMKHEHMDHFPNSLICKRWTKTAKSEYISAANSEELESDTMTVARFASLVASCNRLCEIASKSSETFKWVRDEIFKLINKIEKKGKTKTKDSSSFEDVHDPDVVKTKGAPTKKNHGRKRKRCSNCNRTGHIKKRCPRLIAEVNRTVKNDDVRSVDIF. 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04690 719 MobiDBLite consensus disorder prediction 650 671 - -
Seca11g04690 719 ProSiteProfiles Zinc finger CCHC-type profile. 683 699 IPR001878 GO:0003676|GO:0008270
Seca11g04690 719 SUPERFAMILY Retrovirus zinc finger-like domains 670 702 IPR036875 GO:0003676|GO:0008270
Seca11g04690 719 Pfam MULE transposase domain 310 349 IPR018289 -
Seca11g04690 719 MobiDBLite consensus disorder prediction 1 48 - -
Seca11g04690 719 MobiDBLite consensus disorder prediction 650 685 - -
Seca11g04690 719 SMART 26again6 543 570 IPR006564 GO:0008270
Seca11g04690 719 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Seca11g04690 719 PANTHER OS01G0519700 PROTEIN 67 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04690 Seca-Chr11 134132668 134134929 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g04690 FAR1 9.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04690 - - ccaj:109792835 795.423