Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04687 ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTCTCACAGAGGGAAGAAGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGTCCCTGCTCTGTTGATCAAAGCAGTTATACTTCTATTGCATCTAAAAAGCAAAAGGCTGATTTATCCATCAGCACTAAGGATAGGAAGGAAAAGCTTGGTGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGACTACATAGGCTTCCTTCATAAACAAGTTAAGGTTTGGCCATTCTTGCTACATTACACTTAA 333 0.3994 MIASSFCNADSMFSQREEGIDVRKMMGHKRSPCSVDQSSYTSIASKKQKADLSISTKDRKEKLGERIVALQQLVSPYGKTDTSSVLKEAMDYIGFLHKQVKVWPFLLHYT. 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04687 110 FunFam Transcription factor bHLH113 family 46 106 - -
Seca11g04687 110 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Seca11g04687 110 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 104 IPR036638 GO:0046983
Seca11g04687 110 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 102 - -
Seca11g04687 110 Gene3D - 44 103 IPR036638 GO:0046983
Seca11g04687 110 CDD bHLH_AtbHLH_like 53 102 IPR045239 -
Seca11g04687 110 SMART finulus 53 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04687 Seca-Chr11 134096916 134102440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04687 25 108 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 58.621 1.20e-27 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04687 - - vun:114178105 204.527