LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g04687	ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTCTCACAGAGGGAAGAAGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGTCCCTGCTCTGTTGATCAAAGCAGTTATACTTCTATTGCATCTAAAAAGCAAAAGGCTGATTTATCCATCAGCACTAAGGATAGGAAGGAAAAGCTTGGTGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGACTACATAGGCTTCCTTCATAAACAAGTTAAGGTTTGGCCATTCTTGCTACATTACACTTAA	333	0.3994	MIASSFCNADSMFSQREEGIDVRKMMGHKRSPCSVDQSSYTSIASKKQKADLSISTKDRKEKLGERIVALQQLVSPYGKTDTSSVLKEAMDYIGFLHKQVKVWPFLLHYT.	111

Showing 1 to 1 of 1 entries

Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g04687	110	FunFam	Transcription factor bHLH113 family	46	106	-	-
	Seca11g04687	110	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	47	96	IPR011598	GO:0046983
	Seca11g04687	110	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	49	104	IPR036638	GO:0046983
	Seca11g04687	110	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	42	102	-	-
	Seca11g04687	110	Gene3D	-	44	103	IPR036638	GO:0046983
	Seca11g04687	110	CDD	bHLH_AtbHLH_like	53	102	IPR045239	-
	Seca11g04687	110	SMART	finulus	53	102	IPR011598	GO:0046983

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g04687	Seca-Chr11	134096916	134102440	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g04687	25	108	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G05710	58.621	1.20e-27	97.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g04687	-		-	vun:114178105	204.527

Showing 1 to 1 of 1 entries