Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04656 ATGGATCGGCCTGCGATGGCTGTTGGGCCTGGAATGGATATGCCGATCATGCATGACAGCGATCGCTATGAACTTGTGCGCGATATTGGTTCTGGCAATTTCGGGGTAGCTAGGCTTATGAGGGACAAACAGACAGATGAACTTGTTGCTGTCAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAAATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTTATATTGACCCCATCACATTTGGCAATTGTAATGGAATATGCTTCTGGAGGAGAGCTATTTGAGAGAATATGCAATGCAGGGCGGTTCAGTGAGGATGAGAATGCCCATTATTTTATGCTGCAGGCACGCTTCTTTTTCCAACAACTCATATCTGGTGTTAGCTATTGTCATGATATGCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGCAGTCCTGCTCCTCGTTTGAAGATCTGTGATTTTGGCTATTCAAAGTCCTCTGTGCTACATTCACAACCAAAATCTACAGTTGGTACCCCTGCATATATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGAAAGATTGCAGATGTGTGGTCCTGTGGTGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAGGAGCCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTATTCAATTCCTGACTATGTTCATATATCTCCTGAATGTCGTCATTTGATCTCAAGGATTTTTGTTGCTGATCCTGCTAAGAGAATAACCATTCCTGAGATTAAAATACATGAGTGGTTTTTGAAGAACCTTCCAGCTGATCTAATGGATGGGAATACAATGAACAACCAGTTTGAGGAACCTGATCAACCAATGCAAAGCGATGAAGAAATCATGAAGATAATTACTGAGGCTACAATTCCTGCAGCTGGAACTCAGTCTCTGAACCAGTATCTTACTGGTAGCTTGGATATCGATGACGACATGGAGGAGGACTTAGATACTGATCCTGACCTTGATATAGATAGCAGTGGAGAAATAGTTTATGCTATGTAA 1116 0.4131 MDRPAMAVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKQTDELVAVKYIERGEKIDENVQREIINHKSLRHPNIVRFKEVILTPSHLAIVMEYASGGELFERICNAGRFSEDENAHYFMLQARFFFQQLISGVSYCHDMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRITIPEIKIHEWFLKNLPADLMDGNTMNNQFEEPDQPMQSDEEIMKIITEATIPAAGTQSLNQYLTGSLDIDDDMEEDLDTDPDLDIDSSGEIVYAM. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04656 371 ProSiteProfiles Protein kinase domain profile. 23 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04656 371 SMART serkin_6 23 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04656 371 PANTHER SERINE/THREONINE KINASE 22 313 - -
Seca11g04656 371 Pfam Protein kinase domain 23 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g04656 371 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Seca11g04656 371 Gene3D Transferase(Phosphotransferase) domain 1 99 294 - -
Seca11g04656 371 CDD STKc_SnRK2-3 22 286 - -
Seca11g04656 371 FunFam Serine/threonine-protein kinase SRK2E 99 295 - -
Seca11g04656 371 SUPERFAMILY Protein kinase-like (PK-like) 15 300 IPR011009 -
Seca11g04656 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Seca11g04656 371 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Seca11g04656 371 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04656 Seca-Chr11 133056966 133061291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04656 16 310 CBL-interacting serine-threonine protein kinases AT4G24400 40.777 2.23e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca11g04656 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04656 K14498 - qsu:112032862 667.151