Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04655 ATGGGTTCGGTTCCTGCAGAACTGAGCTTGGATTTAAGACCTAGTTTCGTTCCCAAAACCATCGCTGATTTCCTCTACGACCTCTCCACCATCCCTGCTTCCTCCGACAAGCTCTCTAGGCTCCACGATTTCCTCTCCCGATTGGAAGATGAGCTCAGGAAGATCGACGCTTTCAAGCGCGAGCTTCCTCTCTGCATGTTCCTCTTAAACGACGCAATTTTAGTTTTGAAGGAGGAATCGGAAAAATGCAGGGCTCATAATTCTCTGCCAGTGTTGGAAGAGTTTATTCCCTTGAAGAAAGAGCGTGATCAGAGTGAGGGAAATGATAGCAAGGAGAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAACAACAACACTGCCACTAATAATAATAATAATGCCTCTGATCAAAAGCAACATCATAATCATAATAAATTAGAAACCAAGGTACTAAAAAGGAAGAGTAGATGGCAGAAAATTGAAGAAGAAAGGCAATCTGTGGCTGAAGACCCTTTTCAATCTTGTAGTAATAGAAATGGAGCAAGTGCTTTTATGCCTTTTTCCTCATACCCTTCTGTCCCTGTGACAACAGTGGCACTGGCAACAACCAAAGAAGAGAAGGAAGAAACTGTTATCAATAGACTCTCTCTTCTGACCCCTGGTGTGAAAACTTTGAGGGAGGGATTTGGTGGTTCAAGGGGTTCCAGAACCAGCTCCAATAGGGCAGTTTCTTCCTCTCCTCCTACAGTGCAGCCAAGTTTGCGTGCAGGACCACTTCAGCAGCAGCAACAAACAGCTAGGAAACAGAGAAGATGCTGGTCACCAGAATTGCACCGTCGATTTGTTAATGCATTGCAGAAGCTCGGTGGTTCTCAAGCAACACCAAAGCAAATTAGAGAACTCATGCAGGTTGATGGCCTGACAAATGATGAAGTGAAGAGCCATTTGCAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCAAATTCTAATCAATCTGTTGTAGTTCTTGGAGGTTTGTGGATGTCCCAAGATCAATACAATGACTCTTCAAAGGGTAGCAGTTCAGGGTCTGGTTCTCCACAAAGTCCCCTTCATTTAGCAACAGGATCAAGGGGAGGGACATCCCCAACTGAGGGTGAAAGCATGGAAGATGATGAAGATGAAAAATCTGAGAGTTATAGCTGGAAAAGTCACATTCAGAAAGCTGGAAAAGTTGATGTATAG 1248 0.4391 MGSVPAELSLDLRPSFVPKTIADFLYDLSTIPASSDKLSRLHDFLSRLEDELRKIDAFKRELPLCMFLLNDAILVLKEESEKCRAHNSLPVLEEFIPLKKERDQSEGNDSKENECRDKKNWMSSVQLWNNNTATNNNNNASDQKQHHNHNKLETKVLKRKSRWQKIEEERQSVAEDPFQSCSNRNGASAFMPFSSYPSVPVTTVALATTKEEKEETVINRLSLLTPGVKTLREGFGGSRGSRTSSNRAVSSSPPTVQPSLRAGPLQQQQQTARKQRRCWSPELHRRFVNALQKLGGSQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAANSNQSVVVLGGLWMSQDQYNDSSKGSSSGSGSPQSPLHLATGSRGGTSPTEGESMEDDEDEKSESYSWKSHIQKAGKVDV. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04655 415 Pfam Myb-like DNA-binding domain 276 326 IPR001005 -
Seca11g04655 415 Gene3D - 271 332 - -
Seca11g04655 415 NCBIfam myb-like DNA-binding domain, SHAQKYF class 274 328 IPR006447 GO:0003677
Seca11g04655 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 271 330 IPR017930 -
Seca11g04655 415 FunFam Myb family transcription factor 273 330 - -
Seca11g04655 415 MobiDBLite consensus disorder prediction 133 159 - -
Seca11g04655 415 MobiDBLite consensus disorder prediction 237 276 - -
Seca11g04655 415 SUPERFAMILY Homeodomain-like 271 331 IPR009057 -
Seca11g04655 415 MobiDBLite consensus disorder prediction 232 278 - -
Seca11g04655 415 MobiDBLite consensus disorder prediction 354 415 - -
Seca11g04655 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 405 IPR044787 GO:0003700|GO:0006355
Seca11g04655 415 MobiDBLite consensus disorder prediction 397 415 - -
Seca11g04655 415 MobiDBLite consensus disorder prediction 354 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04655 Seca-Chr11 132993746 132996609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04655 6 349 G2-like Transcription Factor Family AT2G03500 40.720 4.47e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca11g04655 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04655 - - mtr:25493035 546.969