Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04636 ATGGCTCAACCAAGTAACAGTGCCGATCTGAACCCACACCCTCAGCAACACCACCAGCAACAGTGGGCGCAGCCGCAGCAGTATCAGCAGCAATGGATGGCCATGCAGTATCCAGCAACAGCTATGGCTATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCTTATGTTCACCACCATTACCAGCCTCACACGCCTGTTCCTCCGCCGCAGCATCACCATAACCACCAGCAGCAGAAGCAGCAGCAGCAACAAGGCTCCACCGATGAGATCAGGACGATCTGGCTCGGTGACCTTCACCATTGGATGGATGAGAATTACCTCCATAACTGCTTTGCTCACACCGGCGAAGTTGTATCGGCCAAGGTCATACGAAATAAGCAAACCGGTCAGTCGGAGGGATATGGATTTGTGGAGTTCTATTCACGAGCAACGGCTGAGAAAGTCTTGCAGAACTATAATGGTACTATGATGCCAAATACAGATCAGGCATTTCGTTTGAATTGGGCTACATTCAGTGCAGGCGATAGGCGTACTGATGCTACTTCTGATCTCTCTATATTTGTGGGAGACCTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACCTTTGCTAGCAGATTTTCATCTATTAAGGGAGCCAAAGTTGTAATTGATTCTAATACTGGCCGTTCAAAAGGCTACGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGAGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCTATGCGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCACAAGCTGTGGTGTTGGCTGGTGGACACTCTAATGGTGCTGTGGCCCAAGGTTCCCATCCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACAACCATTTTTAAAATTTGGTGATGTTGTCTCAGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGACAGAAAGAATGCTGAAGAGGCAATTCAGGCATTGAATGGAACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGACTGATTCCAATGGAAGCCATTACGGTGGTCAGGGTTATGGAGGCCATGGATATGCTGCGAGACACAATCAGGATATAGGTATGCATCCTGCTGCTGCTGCTGTTCAAGGGGCTTCGTAA 1275 0.4675 MAQPSNSADLNPHPQQHHQQQWAQPQQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHHYQPHTPVPPPQHHHNHQQQKQQQQQGSTDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRTDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSNGAVAQGSHPEGDSNNTTIFVGGLDSDISDEDLRQPFLKFGDVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGSHYGGQGYGGHGYAARHNQDIGMHPAAAAVQGAS. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04636 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Seca11g04636 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 378 IPR000504 GO:0003723
Seca11g04636 424 MobiDBLite consensus disorder prediction 74 91 - -
Seca11g04636 424 FunFam Polyadenylate-binding protein RBP47 288 404 - -
Seca11g04636 424 CDD RRM2_SECp43_like 187 266 - -
Seca11g04636 424 CDD RRM1_SECp43_like 96 176 - -
Seca11g04636 424 Gene3D - 176 282 IPR012677 -
Seca11g04636 424 FunFam Polyadenylate-binding protein RBP47B 176 278 - -
Seca11g04636 424 Gene3D - 288 412 IPR012677 -
Seca11g04636 424 Gene3D - 94 174 IPR012677 -
Seca11g04636 424 MobiDBLite consensus disorder prediction 1 24 - -
Seca11g04636 424 SUPERFAMILY RNA-binding domain, RBD 296 403 IPR035979 GO:0003676
Seca11g04636 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 371 IPR000504 GO:0003723
Seca11g04636 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Seca11g04636 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 164 IPR000504 GO:0003723
Seca11g04636 424 SUPERFAMILY RNA-binding domain, RBD 172 284 IPR035979 GO:0003676
Seca11g04636 424 FunFam Polyadenylate-binding protein RBP47B 94 174 - -
Seca11g04636 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 382 - -
Seca11g04636 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 175 IPR000504 GO:0003723
Seca11g04636 424 SMART rrm1_1 96 171 IPR000504 GO:0003723
Seca11g04636 424 SMART rrm1_1 307 374 IPR000504 GO:0003723
Seca11g04636 424 SMART rrm1_1 189 263 IPR000504 GO:0003723
Seca11g04636 424 MobiDBLite consensus disorder prediction 63 91 - -
Seca11g04636 424 SUPERFAMILY RNA-binding domain, RBD 62 177 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04636 Seca-Chr11 132326123 132337148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04636 97 385 Eukaryotic Initiation Factors Gene Family AT4G34110 29.831 1.90e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04636 - - gmx:100814564 614.764