Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04579 ATGTCCTCCTCCTCCTTCTCCCCCGCCACCCTCACCACCGAACAAGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTCGTCGCCGGTTCCACCTCCACCTCTTCCTCCGTCATGGCCAATTCCATACCTGAATTTCACTTGCCAGATCCCGCCGCCGGGAGCAGTTTCGCGAACATGGAGACTTGCCGTGAATGCAACATCGCTGGGTGCTTGGGTTGCAACTTTTTCCCCGAAGAGAATAATAATAATAAGAAAAAGCAGAAGAGGGCTAAGAAGAAATACAGGGGCGTGAGGCAGAGGCCTTGGGGTAAATGGGCCGCAGAGATTCGTGACCCAAGGCGCGCGGCCCGGGTCTGGCTCGGGACCTTTAACACAGCGGAAGAAGCGGCCATGGCTTACGACAAAGCTGCTATCGAGTTCCGTGGGCCTCGGGCCAAGCTCAATTTCCCGCTCGTCGATGAGTCTCTGAGTATGCAGCACGCGGAGCCAGAGTCGATGGTGGTTCCTAATTCAGAGCATAATAATATAAAGGTTGAGAATATGAATCAGGAAATGGAATTTGGGAACAAGGACAGTGAATTCTGGGATAGGATTGCCGAAGCTGATTTGCAGCTCATGATGATGGATTTTGGTGGAGATAATTCTTCTGACTCTGCTACTGGGAACACTCTTAGTATGTAA 684 0.5234 MSSSSFSPATLTTEQELSVIVAALTNVVAGSTSTSSSVMANSIPEFHLPDPAAGSSFANMETCRECNIAGCLGCNFFPEENNNNKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAAMAYDKAAIEFRGPRAKLNFPLVDESLSMQHAEPESMVVPNSEHNNIKVENMNQEMEFGNKDSEFWDRIAEADLQLMMMDFGGDNSSDSATGNTLSM. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04579 227 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Seca11g04579 227 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Seca11g04579 227 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Seca11g04579 227 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Seca11g04579 227 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Seca11g04579 227 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Seca11g04579 227 PANTHER DNA-BINDING DOMAIN 62 178 IPR044808 GO:0003700|GO:0009873
Seca11g04579 227 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Seca11g04579 227 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Seca11g04579 227 FunFam Ethylene-responsive transcription factor 2 93 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04579 Seca-Chr11 130741952 130742635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04579 11 159 AP2-EREBP Transcription Factor Family AT4G34410 44.974 4.10e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g04579 AP2 7.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04579 - - gsj:114420690 303.523