Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04550 ATGGCTACCCCAAGTAAGTCAGCACCAATAATGTCTTCAGACTCCTTGGAACAGAAAGGGAAAAATATTACTGAATCAAATGTGAACATGCTTCAATGTCCTTTAAACCTGCAACACCATAGCTCCTTAGATGGCCCGGTAGCTATACTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGGCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTGCGGGTGCACCCGGTAATTAAAGGAGCTGTTATGATGTTTTCCGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTCGAGAGGGATGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGAAGAAAAGATGCTGCTGACAAAGCTATATTGGTTGACATGTTCTTATTTGCTCTTGACAACCATCCACCTTCCTCTATCATGCTAATATCTGGAGATGTTGATTTTGCTCCTGCACTTCACATTCTCGGTCAGCGGGGGTATACTGTAGTTCTTGTCATCCCTGCTGGTGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAGTTTGTCTGGGATTGGCCTAGTGTGGCTCGTGGAGAAGGCTTTGTTCCCCCCTCAAAGGCTTTAGTGCCACCCCGTGGAGGCTCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGACAACTCCGAAGCACAAAATGAAGAAGAATCAATAGTTTATAGAGGGATGTCACAGAGCTATTATAACTCAACTGGTTTCTCTATGGTCTCACAATCTCTGTCTGAATACAACTCAGCAAACATGCCTTTCTTGCCAACTGTGAGATCACATAGTCTTCCATCTGGATTGAATGATGTTACAGGAGGACCTATGCCTTCTAGTGACCATACTGAATGCCAGATATGGGTTCAGCCAGGAGATTTAAATGGTCTAAAGGGCCAACTGGTAAGGTTACTTGAGCTGTCTGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAATGAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATACCATGGCTGTAGAAGGGAAAGGGCATCGTAAATTTGTGTATCTCAGAAACTGGAAGGCATGCCCAAGTGCTCCTCCGCTGTCTCCTGCAAAGAAAGATAAGAAAGGAAAAGGGGCACAGGAAGAGAATGCAAATGTTGTCACTGGTGGCTGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATTGAAGAACATGATGAGAGAAGTTGCACAGGAAAGGGTAATCAGGGGAGAGCAGCTAGATGTGAAGTTGATGACCGTATTATTGAGCAGTTCAAGTATGAGCTGCAAGAGATTCTAGTCAGTTATTCTTGTCGAATATTCCTAGGTTGTTTTGAGGCTATATACCAGCAACGGTACAAGAGACAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAGTATTGCATGAGGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGAGTGGTTAG 1587 0.4423 MATPSKSAPIMSSDSLEQKGKNITESNVNMLQCPLNLQHHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNHPPSSIMLISGDVDFAPALHILGQRGYTVVLVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGGSIELAGYLMGCHINDNSEAQNEEESIVYRGMSQSYYNSTGFSMVSQSLSEYNSANMPFLPTVRSHSLPSGLNDVTGGPMPSSDHTECQIWVQPGDLNGLKGQLVRLLELSGGCLPLARVPAEYQKIYGRPLYVAEYGAMKLVNLFKKMGDTMAVEGKGHRKFVYLRNWKACPSAPPLSPAKKDKKGKGAQEENANVVTGGCSSDEFSDEERVVIEEHDERSCTGKGNQGRAARCEVDDRIIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKRQLEYQRFGVDKLEDLLEKVSDVVVLHEEPVSKRKFLAAVSG. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04550 528 CDD PIN_limkain_b1_N_like 46 172 - -
Seca11g04550 528 CDD LOTUS 309 378 - -
Seca11g04550 528 CDD LOTUS 454 516 - -
Seca11g04550 528 Pfam NYN domain 46 186 IPR021139 GO:0004540
Seca11g04550 528 ProSiteProfiles OST-type HTH domain profile. 453 527 IPR025605 -
Seca11g04550 528 Gene3D - 42 192 - -
Seca11g04550 528 PANTHER LIMKAIN B LKAP 26 492 IPR024768 GO:0005777|GO:0010468
Seca11g04550 528 ProSiteProfiles OST-type HTH domain profile. 308 380 IPR025605 -
Seca11g04550 528 MobiDBLite consensus disorder prediction 388 407 - -
Seca11g04550 528 Pfam OST-HTH/LOTUS domain 454 516 IPR025605 -
Seca11g04550 528 Pfam OST-HTH/LOTUS domain 310 376 IPR025605 -
Seca11g04550 528 Gene3D - 308 377 IPR041966 -
Seca11g04550 528 Gene3D - 449 520 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04550 Seca-Chr11 129578017 129581492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04550 43 197 C2H2 Transcription Factor Family AT5G61190 41.290 8.44e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04550 - - gmx:100818186 947.577