Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04541 ATGCGTGCCAATTTAGAACCGTTGGATTTGGGGATTCAGATACCCTACCACTTCAGGTGCCCAATCTCTCTTGAGCTTATGCGTGACCCTGTCACGTTGTGCACCGGTCAAACCTACGACCGTGGCAGCATCGAGTCATGGGTGAACACAGGCAACACCACGTGCCCCGTCACGCGAGCACCCCTCACTGACTTCACCCTAATCCCAAACCACACCCTTCGCCGCCTCATCCAAGAGTGGTGCGTTGCCAACCGCGCTTTTGGCGTTGAGCGTATCCCCACACCCAAACAGCCCGCAGACCCTGCCCTCGTTCGCTCTTTGCTCAACCAATGTTCTTCCGATTCTGCCCCCACTCATCTCCGCCTCAACTCGCTTCGTCGACTCAGACAACTCGCCCGTGACTCAGACTATAACCGCTCCCTCATTGCCTCTCACAACGTTCGTCACATCTTACTCCCTATCCTCTTCAACCACCACGGTTCCGATGAGTTGAAGCACGAGTCACTCGCTCTACTCGTTCTCTTCCCACTCGGCGAGTCAGATTGCGCATCTTTAGCTTCAGATTCAGATAAGATCAACTACCTCACGCGTCTTCTTTCTCATACTTCGCTCGATGTCCGAGTCAACTCAGCCGCGCTCATCGAGATCGTTGTCGCCGGGACTCACTCGCCGGAGCTCCGCGCTCAGGTGAGCAATGTCGACGGGATCCACGACGGCGTGGTGGAGATACTCCGGAGTCCGATCTCGTACCCGCGCGCGATGAAGGTTGGGATCAAAGCCTTGTTCGCGCTCTGCCTGGTGAAGCAGACGCGGCACAGGGCGGTGGTAGCCGGAGCACCGGCGGTGCTTGTCGACCGGCTCCCGGACTTTGAAAAATGTGACGCGGAGAGGGCGCTGGCGACGGTGGAGCTTCTCTGCCGGATTCCGGCGGGATGCGCGGCGTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATACTGAAGATATCGGATCGAGCGACGGAGTACGCCGCCGGAGCGTTGCTGTCGCTGTGCTCGGAATCGGAGAAGTGCCAGAGGGAGGCGGTGACGGCGGGGGTGCTGACTCAGCTTCTGCTTCTGGTACAAAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCCATCGGAAATTCTGACGATTTTGCGTGCAGCCAGGTTGTTGTGGTGCCCTTTTGA 1248 0.5801 MRANLEPLDLGIQIPYHFRCPISLELMRDPVTLCTGQTYDRGSIESWVNTGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQCSSDSAPTHLRLNSLRRLRQLARDSDYNRSLIASHNVRHILLPILFNHHGSDELKHESLALLVLFPLGESDCASLASDSDKINYLTRLLSHTSLDVRVNSAALIEIVVAGTHSPELRAQVSNVDGIHDGVVEILRSPISYPRAMKVGIKALFALCLVKQTRHRAVVAGAPAVLVDRLPDFEKCDAERALATVELLCRIPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESEKCQREAVTAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQVVVVPF. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04541 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Seca11g04541 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Seca11g04541 415 SUPERFAMILY RING/U-box 12 90 - -
Seca11g04541 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Seca11g04541 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Seca11g04541 415 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Seca11g04541 415 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Seca11g04541 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Seca11g04541 415 Gene3D - 93 404 IPR011989 -
Seca11g04541 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04541 Seca-Chr11 129268036 129269283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04541 1 415 U-box Gene Family AT3G19380 66.667 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04541 - - var:108341190 712.605