Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04535 ATGACATTAGAAAATGAAGGTGGCTCCAATGTGGGCTTCTTGTCTAATCATAACGACGCAGATAAGATGATAAGCATCAACCAAAATGGATCAGAATTAGGAACTACTGTGGTGAATAATAAGCGATCACTAAAAGGGAAGAATGTTGCGGTTGATACTACAGATCAAGGGAGTGATATTAATGCTGGAAACACTACTCGTGATGTTGCTCATATGTTGATTGAGAGAGAAAGAAGGAAGAAAATGAGGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTGCAAAGGCGGATAAATCAACCGTTGTGGATGAAGCAGTGAGTTACGTAAAAAATCTCGAGCAAACTCTTGAAAATCTAAAAAAGCGGAAAAAAGAAAGGCTCCAACATGTGTCCACCAATGCTACTTTTGGGTGTGACTCATCTGTGATACACTCACAGTCAGTGTGGCATCCCTATGACCCATCATTGATAGCTGCTGGTGGTCAAGGATCATCTTCGAATAACAACCACTTGTCCAATATTACTGCAGTAAATGGAACTTCAATTAATAATGGATTACAACCTGCAATAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAGATGTAGCACAATTTTGCATATGTGCAACCAAGAAGCCTGGCATCTTGTCCAACATCGCTTATGTGCTCGAGAAGTACAACATTGAGGTCCTATATGCCAACATTTTATCCAATAATGGAGATGCATACATGATTCAAGCCCATGTAAGTTTCAAACACCCCCACTTTATATATCATTTTCTTATATTATATATGCTTTGGAGTCATTCATAA 843 0.3879 MTLENEGGSNVGFLSNHNDADKMISINQNGSELGTTVVNNKRSLKGKNVAVDTTDQGSDINAGNTTRDVAHMLIERERRKKMRNMFSTLHSMLPHLPAKADKSTVVDEAVSYVKNLEQTLENLKKRKKERLQHVSTNATFGCDSSVIHSQSVWHPYDPSLIAAGGQGSSSNNNHLSNITAVNGTSINNGLQPAIAFQTWTSPNVVLNIYGDVAQFCICATKKPGILSNIAYVLEKYNIEVLYANILSNNGDAYMIQAHVSFKHPHFIYHFLILYMLWSHS. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04535 280 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 22 260 IPR044278 GO:0003700|GO:0006355|GO:0009960
Seca11g04535 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 133 IPR036638 GO:0046983
Seca11g04535 280 Coils Coil 106 133 - -
Seca11g04535 280 CDD bHLH_AtbHLH_like 71 123 IPR045239 -
Seca11g04535 280 SMART finulus 72 122 IPR011598 GO:0046983
Seca11g04535 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 116 IPR011598 GO:0046983
Seca11g04535 280 Pfam Helix-loop-helix DNA-binding domain 69 117 IPR011598 GO:0046983
Seca11g04535 280 Gene3D - 64 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04535 Seca-Chr11 128935388 128938087 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04535 71 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 41.584 1.69e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g04535 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04535 - - cam:101510402 193.741