Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04533 ATGATAAGCATCAACCAAAATGGATCAGAATTAGGAACTACTGTGGTGAATAATAAGCGATCACTAAAAGGGAAGAATGTTGCAGTTGATACTACAGATCAAGGGAATGATATTAATGATGGAAACACTACTCGCGATGCTGCTCATATATGGATTGAGAGAGAAAGAAGGAAGAAAATGAAGAATATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCAAAGGCGGATAAATCAACCGTTGTGGATGAAGCAGTGAGCTACATACAAAATCTCGAGCAAACTCTTGAAAAGCTAGAGAAGCAGAAAAAAGAAAGGCTCCAATATGTGTCCACCAATGCTACTTTTTCAGTGTGGCATCCCTATGACCCATCATTGATAACTGGTGGTGGTCAAGGATCATCTTCGAATAACAACCACTTGTCCAATATTACTGCAGTAAATGGAACTTCAATTAATAATGGATTACAGCCTGCAATAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAAATGTAGCACAATTCTGCATATGTCCAACCAAGAAGCCTGACATCTTGTCCAACATCGCTTATGTGCTCGAGAAGTACAGCATTGAGGTCCTATATGCCAACATTTTATCCAATAATGGAGATGCATACATGATTCAAGCCCATGTAAGTTTCAAACTCCACCCCCACTTTATATATCATTTTGTTATATTATATATGCTTTGGAGTCATTCATAA 750 0.3813 MISINQNGSELGTTVVNNKRSLKGKNVAVDTTDQGNDINDGNTTRDAAHIWIERERRKKMKNMFSTLHSMLPHLPPKADKSTVVDEAVSYIQNLEQTLEKLEKQKKERLQYVSTNATFSVWHPYDPSLITGGGQGSSSNNNHLSNITAVNGTSINNGLQPAIAFQTWTSPNVVLNIYGNVAQFCICPTKKPDILSNIAYVLEKYSIEVLYANILSNNGDAYMIQAHVSFKLHPHFIYHFVILYMLWSHS. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04533 249 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 7 228 IPR044278 GO:0003700|GO:0006355|GO:0009960
Seca11g04533 249 Pfam Helix-loop-helix DNA-binding domain 47 95 IPR011598 GO:0046983
Seca11g04533 249 Gene3D - 36 110 IPR036638 GO:0046983
Seca11g04533 249 Coils Coil 84 111 - -
Seca11g04533 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 109 IPR036638 GO:0046983
Seca11g04533 249 CDD bHLH_AtbHLH_like 49 102 IPR045239 -
Seca11g04533 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Seca11g04533 249 SMART finulus 50 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04533 Seca-Chr11 128921627 128924260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04533 36 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 42.593 7.91e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g04533 HLH 9.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04533 - - rcu:8275281 182.956