Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca11g04530 | ATGACATTAGAAAATGAAGGTGGCTCCAATGTGGGCTTCTTGTCTGATCATAACGACGCAGAGAAGATGATAAGCATCAACCAAAATGGATCAGAATTAGGAACTACTGTGGTGAATAATAAGCGATCACTAAAAGGGAAGAATGTTACGGTTGATACTACAGATCAAGGGAATGATATTAATGCTGGAAACACTACTCGTGATGCTGCTCATATGTTGATTGAGAGAGAAAGAAGGAAGAAAATGAGGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCAAAGGCGGATAAATCAACCGTTGTGGATGAAGCAGTGAGTTACATAAAAAATCTCGAGCAAACTCTTGAAAATCTAAAAAAGCAGAAAAAAGAAAGGCTCCAACATGTGTCCACCAATGCTACTTTTGGGTGTGACTCATCTGTGATACACTCACAGTCAGTGTGGCATCCCTATGACCCATCATTGATAGCTGCTGGTGGTCAAGGATCATCTTCGAATAACAACCACTTGTCCAATATTACTGCAGTAAATGGAACTTCAATTAATAATGGATTACAACCTGCAATAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAGATGTAGCACAATTCTGCATATGTGCAACCAAGAAGCCTGGCATCTTGTCCAACATCGCTTATGTGCTCGAGAAGTACAACATTGAGGTCCTATATGCCAACATTTTATCCAATAATGGAGATGCATACATGATTCAAGCCCATGCAAAACGAGCTTCAAACCAGTTCCAAGATGCAAAATTAGTGGAGCAAATGTATAGGCTAGCAGCAGGAGAAATCACCCTATGTATTGCCTAA | 867 | 0.4002 | MTLENEGGSNVGFLSDHNDAEKMISINQNGSELGTTVVNNKRSLKGKNVTVDTTDQGNDINAGNTTRDAAHMLIERERRKKMRNMFSTLHSMLPHLPPKADKSTVVDEAVSYIKNLEQTLENLKKQKKERLQHVSTNATFGCDSSVIHSQSVWHPYDPSLIAAGGQGSSSNNNHLSNITAVNGTSINNGLQPAIAFQTWTSPNVVLNIYGDVAQFCICATKKPGILSNIAYVLEKYNIEVLYANILSNNGDAYMIQAHAKRASNQFQDAKLVEQMYRLAAGEITLCIA. | 289 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca11g04530 | 288 | PANTHER | BHLH DOMAIN-CONTAINING PROTEIN | 25 | 286 | IPR044278 | GO:0003700|GO:0006355|GO:0009960 | |
Seca11g04530 | 288 | SMART | finulus | 72 | 122 | IPR011598 | GO:0046983 | |
Seca11g04530 | 288 | Coils | Coil | 106 | 133 | - | - | |
Seca11g04530 | 288 | CDD | bHLH_AtbHLH_like | 71 | 123 | IPR045239 | - | |
Seca11g04530 | 288 | Gene3D | - | 64 | 139 | IPR036638 | GO:0046983 | |
Seca11g04530 | 288 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 66 | 116 | IPR011598 | GO:0046983 | |
Seca11g04530 | 288 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 65 | 133 | IPR036638 | GO:0046983 | |
Seca11g04530 | 288 | Pfam | Helix-loop-helix DNA-binding domain | 69 | 117 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca11g04530 | Seca-Chr11 | 128798865 | 128802385 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca11g04530 | 32 | 258 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G49770 | 40.664 | 6.74e-44 | 150 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Seca11g04530 | HLH | 3.1e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca11g04530 | - | - | cam:101510402 | 221.476 |