Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04528 ATGACGTTTGAAAATGAAGGTGGCTCCAATGTGGGCTTCTTGTCTGATCATAACAATGCAGAGAAGATGATAAGCATCAACCAAATTGGATCAGAATTAGGAACTATTGTGGTGAATAATAATAAGCAATCACTGAGAGGGAAGAATGTTGTTGTTGCTACTACAGATCAAGGGAATGATATTAATAATGGAAACACTACTCGCGATGCTGCTCATATATGGACTGAAAGAGAAAGAAGGAAGAAAATGAGGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCCAAGGCGGATAAATCAACCGTTGTTGATGAAGCAGTGAGCTACATACAAAATCTCGAGCAAACTCTTGAAAAGCTAGAGAAGAAAAAACAAGAAAGGCTCCAATATGTGTCCACCAATGCTACTTTTGGGTGTGACTCATCTTTGGTACACTCACAGTCAGTGTGGCATCCCTATGACCCATCATTGATATCTGCTGGTGATCAAGGATCATCTTCCAATAACAACTACTTGTCCAATATTACCGCAGTTAATGGAACTTCAATCAATAATGGATTACAGCCCGTAGTAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAGATGAAGCACAATTCTGCATATGTGCAACCAAGAAGCCTGGCATCTTGACCACCATCGCTTATGTGCTCGAGAAGTACAACATTGAGGTTCTATCTGCCAACGTTTTGTCCAATAATGGAAATGCATACATGATTCAAGCCCATGCAAAACGAGCTTCAAACCAGTTCCAAGATGCAAAATTAGTGGAGCAAATGTATAGGCTAGCAGCAGGAGAAATCACCCTATGTATTGCCTAA 870 0.4034 MTFENEGGSNVGFLSDHNNAEKMISINQIGSELGTIVVNNNKQSLRGKNVVVATTDQGNDINNGNTTRDAAHIWTERERRKKMRNMFSTLHSMLPHLPPKADKSTVVDEAVSYIQNLEQTLEKLEKKKQERLQYVSTNATFGCDSSLVHSQSVWHPYDPSLISAGDQGSSSNNNYLSNITAVNGTSINNGLQPVVAFQTWTSPNVVLNIYGDEAQFCICATKKPGILTTIAYVLEKYNIEVLSANVLSNNGNAYMIQAHAKRASNQFQDAKLVEQMYRLAAGEITLCIA. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04528 289 CDD bHLH_AtbHLH_like 72 125 IPR045239 -
Seca11g04528 289 Gene3D - 59 133 IPR036638 GO:0046983
Seca11g04528 289 SMART finulus 75 123 IPR011598 GO:0046983
Seca11g04528 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 117 IPR011598 GO:0046983
Seca11g04528 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 132 IPR036638 GO:0046983
Seca11g04528 289 Pfam Helix-loop-helix DNA-binding domain 70 118 IPR011598 GO:0046983
Seca11g04528 289 Coils Coil 107 134 - -
Seca11g04528 289 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 46 287 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04528 Seca-Chr11 128768668 128771541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04528 59 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 45.581 2.22e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g04528 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04528 - - rcu:8275281 226.098