Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04527 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAGCAATTGTTAGCATGATGCAAGGGCCTAGTTCTAGTGGCACAGATATGAATCGTCAGTCTTCCTTGAATCATGTGCAAAATGCAGTTGATTTCCGACTTTCAGATTATAGGGGGTCTTCTGGTGAAACTGCATGTTTACGTGCTAGTGGTACTGGTCCTAATGTGAGCTTGAGTGGCTGGAATACTGGTGAACCTAGTTCTGGACTGAATCTGATCAACGAAGTCAATGATGAAGGTCTAAAATCAGAACATGGGTTATCTTCTTCATGTAGTGCAGCTGCTGAGGATGGTCTCAGATCTGAGGAAAGGCAATTACATGGAAATCAATCTAGAATGTTCCCTTCCTTTTTGCAAGGTTCCAGCTCTAATCATATAACCCAGAATATTAGTCTAGATATGGGGCACATTGCTAGCACTTCTGATCGTGGGAAGGGCAAAGAAATTGGTAGTGGTGCTAGTAACAACAATCCTAGTGGATTAGACAGAGAGAAGACATCATTTGGCAGCGCTTCATGCAGTCATATAGGAACTTCATCTGAAAGCTCTGGATACATGGCATGGGGAGATAGTGCCAGTTCGAGTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTAGGCAACTGTGTACTGGAGGAAGCTCAAGCTCTCTTGTACAATCTGAAAATGGTTACTGGCCTGCTGATTCTGTTGATCTTAATGCTTCTAGCAGCTTAAGTGATTCAACTTTAGAGGATTTTCCTCCATTACAGCAGAACACAAGAAATGAAATGAGACAAGAAGCTCCCATTGCATTTCCATCGATTATAAGTGTTGCAGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATCTACAGCATCAGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTACAAGGCATCATAGTCATTCTTCTCCACATCAAACTCCTGGCTCTCTTTCATTTAATGATTCTTTGGAGTTGAGGTTAACACCTGGAGTAACAGCTGCTAATTGTGGTGCTCAGAACCAGTCACCTGCCCTGCACATGCACCCCTTTCCTTGGAATAGAACTGCTAATCCTAGAGTGGCCAGAGCTTCAACTTATAACTCTGGAGAAAGAGCAGTACGGGAAGATTTTAATTTAAGAATCTTTCCAAGAGATAATACTGAACATCCTATGAATGTGCCTGCATCTTTAGGACATGAACCTACAGGGTGGCATACATCTTCTAGTAATGTGAACAATGCTGGAGGTTTACCTCCTACATCCTGGATTGGATCCAGTTCAGATGTCCACTCATTACCTAATCCCAGCTGGACTTTTAGCCATGACGTCCCTACAGAAAATCTGCAGAGAGTGTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCAGCATCTGGTACTCATAATGGTCATTCTACCCCCTCTACTTCTGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGCAATCAACCATATCCAAGAACAACATTTTTGATGGAAAGAAGGGGTGGTGATGTTCTCCCTGCTCCTCATTCACTGCGAGCATTAGCCTTTGACAATGAGGGGAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGAATCGCTGAAATGCATGACAGGCATAGAGATATGCGCCTTGATGTTGATAACATGTCTTATGAGGAACTATTGGCATTGGAGGAGCGTATAGGAGATGTGAGCACTGGATTGAGTGAGGATATCATTGCTAAGTTGATGAAACAGCGAATTCATGTGTCTTTCATGACAGAGTCTTCTTCGGAGCTCGAACCTTGCTGTATCTGTCAGGAGGAATATACTGATGGAGAGTATGTTGGTTCACTCGATTGTGGGCATGAGTTCCACAGTAATTGCATCAAGCAGTGGCTAATGCAGAAGAATCTCTGCCCCATTTGCAAAACTACAGCCTTAGCTACATGA 2085 0.435 MQGQRRTIGSFPAIVSMMQGPSSSGTDMNRQSSLNHVQNAVDFRLSDYRGSSGETACLRASGTGPNVSLSGWNTGEPSSGLNLINEVNDEGLKSEHGLSSSCSAAAEDGLRSEERQLHGNQSRMFPSFLQGSSSNHITQNISLDMGHIASTSDRGKGKEIGSGASNNNPSGLDREKTSFGSASCSHIGTSSESSGYMAWGDSASSSSLVNWGPSCKRKALEGSSRQLCTGGSSSSLVQSENGYWPADSVDLNASSSLSDSTLEDFPPLQQNTRNEMRQEAPIAFPSIISVAENVERPLRNFDRRITHLQHQESVPLNLTSTGSTRHHSHSSPHQTPGSLSFNDSLELRLTPGVTAANCGAQNQSPALHMHPFPWNRTANPRVARASTYNSGERAVREDFNLRIFPRDNTEHPMNVPASLGHEPTGWHTSSSNVNNAGGLPPTSWIGSSSDVHSLPNPSWTFSHDVPTENLQRVSEFSPWSLFPSISSASGTHNGHSTPSTSGPPSFSQGSSSNQPYPRTTFLMERRGGDVLPAPHSLRALAFDNEGRRRLISEIRQVLIAMRRGENLRAEDYMLFDPFLYHGIAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDIIAKLMKQRIHVSFMTESSSELEPCCICQEEYTDGEYVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTALAT. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04527 694 MobiDBLite consensus disorder prediction 423 449 - -
Seca11g04527 694 ProSiteProfiles Zinc finger RING-type profile. 647 688 IPR001841 -
Seca11g04527 694 MobiDBLite consensus disorder prediction 488 519 - -
Seca11g04527 694 MobiDBLite consensus disorder prediction 310 339 - -
Seca11g04527 694 MobiDBLite consensus disorder prediction 148 196 - -
Seca11g04527 694 SUPERFAMILY RING/U-box 628 691 - -
Seca11g04527 694 SMART ring_2 647 687 IPR001841 -
Seca11g04527 694 MobiDBLite consensus disorder prediction 161 196 - -
Seca11g04527 694 FunFam E3 ubiquitin-protein ligase MBR2 614 692 - -
Seca11g04527 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 692 IPR013083 -
Seca11g04527 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 159 692 IPR045191 GO:0061630
Seca11g04527 694 Pfam Ring finger domain 647 688 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04527 Seca-Chr11 128757323 128763142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04527 18 694 C3H Transcription Factor Family AT2G15530 37.720 6.60e-116 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04527 - K19041 gmx:100809024 1114.37