Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04522 ATGGCGCAGGCTATAGAGCAGGTTCAGTGTTTCGGGCGCAAGAAGAACGCAGTGGCGGTGACATACTGCAAGCGTGGGAGAGGCCTGATCAAGATCAACGGTTGCCCAATCGAGCTGGTCCAACCAGAAATCCTCCGGTTCAAGGCCTTCGAGCCAATCCTCCTCTTAGGGAAGAGCCGCTTCGCCGGCGTCGACATGCGCATCCGCGTCAAGGGCGGTGGACACACCTCCCAGATTTACGCCATCCGTCAGAGCATCGCTAAGGCCCTCGTCGCTTTCTACCAGAAGTACGTTGACGAGCAGAGCAAGAAGGAGATCAAGGATATCCTCGTCCGGTACGATCGCACCTTGCTCGTTGCTGATCCCAGACGCTGCGAGCCCAAGAAGTTCGGTGGTCGTGGTGCTCGCGCTAGGTTCCAGAAGTCTTACCGTTGA 435 0.5747 MAQAIEQVQCFGRKKNAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04522 144 SUPERFAMILY Ribosomal protein S5 domain 2-like 7 144 IPR020568 -
Seca11g04522 144 FunFam 40S ribosomal protein S16 1 144 - -
Seca11g04522 144 ProSitePatterns Ribosomal protein S9 signature. 72 90 IPR020574 GO:0003735|GO:0005840|GO:0006412
Seca11g04522 144 Gene3D - 1 144 IPR014721 -
Seca11g04522 144 Pfam Ribosomal protein S9/S16 12 144 IPR000754 GO:0003735|GO:0005840|GO:0006412
Seca11g04522 144 PANTHER RIBOSOMAL PROTEIN S9 4 141 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04522 Seca-Chr11 128648086 128648520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04522 4 144 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 89.362 2.63e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04522 K02960 - gmx:100779794 278.87