Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04520 ATGGAGATCGCTCACGAGCCACCGCCTTCCCTCGACGGGAGCCCTATCCCCGTCGAGACCCTCGCGAACTCTCCGTCGTCCTCTTCCTCTTGTTCTTCTTCCTCCTCCTCTTCCTCTTCTGCTTCGTCGCCTCGCGACTCGAAGGGAAAGGAGATCGAAGCGACCACGTCGGCGGCGGCGGCGACGGCGCCTCCTGCCAAGTACGATGACGACGAGGAGGAAGAAGAGGACGTTTGCCGGATATGCCGGAACCCTGGTGACGCCGAGAATCCACTCCGGTATCCTTGTGCGTGTAGCGGGAGCATCAAGTTTGTGCATCAAGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGCCAATGCGAGGTCTGCAAACACGCATTCTCTTTCTCTCCTGTTTATGCAGAGAATGCTCCAGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCTTGCCATGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCCTAATTATACCTTTCATAACATTCTGGATATGGCGGTTAGCTTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCCTAAGTCATTTATCCACAGCAGTTATTCTGACTGATTGCCTCCATGGTTTCCTACTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATCTGCGAGAAATTGGGGGACAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATTGCTAGAAGACCTCCTGGACAAGCCAATCGTAATATTAATGGTGATGGGAATGGTGAAGATGCTGGTGGAGCGCAAGGAATTGCAGGGGCAGGTCAAGTGATTAGAAGAAATGCTGAAAATGTTGCTGCAAGGTGGGAGATGCAAGCAGCACGACTAGAGGCTCATGTCGAGCAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAGGATGTACCCTTTGATGAACTTGTTGGCATGCAGGGTCCTGTTTTTCATTTGGTTGAAAATGCCTTCACTGTGCTGGCAAGTAATATGATTTTCCTTGGAGTTGTAATCTTTGTGCCCTTCTCATTGGGCCGCATCATACTCCATTATCTATCCTGGTTCTTCTCTAATGCTAGCAGTCCTGTGCTGTCAGCAGTGGTCCCTCCTACAGATGCATCTCTTTCCCTGGCAAATATTACTTTAAAAAATGCATTAACAGCTGTTAAAAATTTGTCATCTGATACTCAAGAAAGTGGGTCAATTGGTAATGTTGCAGAAATGCTGAAAGTGAATGCAAGTGGATTGAGTGAAATGTCAAACAACATAAGTGCATCTGTTTCAGCTGATCTCTTGAAAGGAGGGTCAATTGGAACTTCAAGGCTTTCTGATGTTACTACTCTAGCTATTGGATATATTTTCATATTTACTCTAATTTTCTGCTACTTTGGCATTGTTGCTTTAATCCGTTACACAAAGGGTGAACCTTTGACTATGGGAAGGTTCTATGGCATTGCTTCAATAGCAGAGACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAAACATTTGATGACCATGGTCAAAGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATTTCCTCTTATGTGTGGGTGGTGGCTCGATGTTTGTACCATACAAATGTTTGGGAAGACAATGGTTCACAGAGCTCAGTTCTTCTCTGCATCTCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTAGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTGCGTAATGGAGTTTTGTACTTCCTTCGGGATCCTGCTGATCCAAACTACAATCCATTCCGTGATCTGATTGACGATCCTGTGCATAAACATGCTCGCAGGGTTCTGTTATCTGTTGCAGTTTATGGCAGTTTGATTGTGATGCTGGTATTTTTGCCAGTCAAACTTGCCATGCGAATGGCACCTTCCATTTTCCCACTTGACATTTCGGTATCTGATCCATTCACCGAAATTCCAGCTGACATGCTACTGTTTCAGATCTGTATACCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATTAAATCCCTACTTCGCTATTGGTTTACAGCTGTTGGTTGGGCACTTGGTTTAACTGATTTCTTACTGCCTAGACCTGATGACAACGGTAGTCAAGAAAATGGAAATGGGGAGCCGGCTAGGCAGGAAAGGCTACAGATAGTACAAGCAGGGGTGCATGATCAGGGTATCGTGCCATTTGCTGGCGATGATTTGAACAGAGTCATTAATGCAGTGGGAGAACTGAATGCTGGAGATGATTATGATAATGATGAGCAATCTGATTCTGACAGTTATGCCTTTGTGCTTCGCATCGTTCTTTTACTGGTGATTGCTTGGATGACTCTCCTTGTCTTCAACTCTGCCCTGATAGTTGTACCAATTTCACTGGGACGGGCACTTTTCAATTCTATTCCTCGACTTCCTATAACTCATGGCATCAAATGCAATGATCTGTATGCGTTCATCATCGGAAGCTATGTGATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATTGAGCAAGTTAGAAAAAGGAGAACTTCAGTTTTGTTGGGCCAAATATGGAAGTGGGTTGGCATTGTGTTTAAGAGTTCTGCACTTCTGTCTATATGGATATTTGTCATCCCAGTGCTGATTGGGCTTCTCTTTGAGCTTTTAGTCATTGTGCCAATGAGAGTTCCGGTGGATGAAAGTCCAGTATTCCTCCTTTATCAAGACTGGGCATTAGGTCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAAAGTTGGCGAGTAAAATTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGCTGCAAGGTCTTTGGGTCCTTCGGGAGATTGTACTTCCAATCATAATGAAACTATTGACAGCATTGTGTGTACCTTACGTATTGGCCAGAGGTGTGTTTCCAGTGCTTGGGTACCCCTTGGTAGTCAATTCTGCTGTCTATCGGTTTGCATGGTTGGGATGCCTGTCTTTCAGTTTCTTGTGCTTTTGTGCCAAGAGATTTCACGTTTGGTTCACAAATCTCCACAATTCAATACGTGATGACCGATATCTGATTGGCCGGAGGTTACATAACTTTGGAGAAACTGTTGAGAAGGCAAATGAAGCAGGAACTTCTACAGGGATGCAGGATACTATTTTACTAGATACAAGTTCAAACCAACAAGATCGCGAAGTAGATGTTGGACTACGGTTGCGGCGCTTAAATCAACAAGTTGGCTGA 3381 0.4457 MEIAHEPPPSLDGSPIPVETLANSPSSSSSCSSSSSSSSSASSPRDSKGKEIEATTSAAAATAPPAKYDDDEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARIARRPPGQANRNINGDGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSNASSPVLSAVVPPTDASLSLANITLKNALTAVKNLSSDTQESGSIGNVAEMLKVNASGLSEMSNNISASVSADLLKGGSIGTSRLSDVTTLAIGYIFIFTLIFCYFGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMKHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRAQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDNGSQENGNGEPARQERLQIVQAGVHDQGIVPFAGDDLNRVINAVGELNAGDDYDNDEQSDSDSYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQVRKRRTSVLLGQIWKWVGIVFKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLSFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGETVEKANEAGTSTGMQDTILLDTSSNQQDREVDVGLRLRRLNQQVG. 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04520 1126 PANTHER SSM4 PROTEIN 60 1082 - -
Seca11g04520 1126 MobiDBLite consensus disorder prediction 17 45 - -
Seca11g04520 1126 SUPERFAMILY RING/U-box 74 129 - -
Seca11g04520 1126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Seca11g04520 1126 CDD RING_CH-C4HC3_MARCH6 78 127 - -
Seca11g04520 1126 Coils Coil 296 316 - -
Seca11g04520 1126 SMART ringv_2 78 126 IPR011016 GO:0008270
Seca11g04520 1126 Pfam RING-variant domain 79 125 IPR011016 GO:0008270
Seca11g04520 1126 MobiDBLite consensus disorder prediction 248 282 - -
Seca11g04520 1126 ProSiteProfiles Zinc finger RING-type profile. 79 126 IPR001841 -
Seca11g04520 1126 FunFam Probable E3 ubiquitin ligase SUD1 64 137 - -
Seca11g04520 1126 ProSiteProfiles Zinc finger RING-CH-type profile. 71 132 IPR011016 GO:0008270
Seca11g04520 1126 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04520 Seca-Chr11 128506761 128514197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04520 14 131 C3H Transcription Factor Family AT4G00335 28.906 1.09e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04520 K10661 - gmx:100811171 2003.02