Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04518 ATGTATTCGCATCGTGATCCAAGTATCCGTAAAAGTGGGGCAGGAAATATATTTATAAAGAATTTGGACAAGGCAATTGACCACAAGGCGTTACATGATACCTTTTCTACTTTTGGGAATATCCTTTCTTGCAAGGTAGCTACTGATGCATCTGGCCAATCAAAAGGCTATGGATTTGTACAATTTGATACTGAGGAGGCTGCTCAAAAGGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAGACTGCCATTGACAAGGCAAAATTCAACAATGTTTTTGTAAAGAATCTGTCAGAATCCACCACTGATGATGAATTGAAGAATATTTTTGGTGAATTTGGAACAATTACCAGTGCTGTAGTAATGAGGGATGGGGATGGGAAGTCAAAGTGCTTTGGATTTGTAAACTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTTAATGGCAAAAAATTTGATGACAAAGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGAATGAATTGAAACAAAAATTTGAGCAGAGCATGAAAGAAGCTGCAGATAAATATCAAGGGGCAAACTTATATGTAAAAAATTTAGATGATAGCATTGGTGATGACAAACTTAAGGAGCTGTTCTCCCCTTATGGTACTATTACCTCTTGCAAGGTTATGAGAGACCCCAATGGCATAAGTCGAGGATCGGGTTTTGTTGCATTCTCAACTCCTGAGGAGGCATCTAGAGCACTCATGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTGGCCCAGCGGAAAGAAGATAGAAGAGCTAGACTGCAGGCACAATTTGCTCAAATGCGGCCTGTTGCTATGCCACAAGCTGTTGCTCCTCGTGTGCCAATGTACCACCCCCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATGGTCAAGGCCCTCATGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAGCAACAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCTGTGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCTGGTGGAAGACGTGCAGGTGCAGTCCAGCAGTCCCAGCAACCAGTTCCTCTTATGCCACAGCAGATGCTTCCTCGGGGGCGTGTGTATCGATATCCTCCTGGTAGGGGTATTCCTGATGTTCCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTTCCTTATGATGTGGGTGGTATGCCAATGCGTGATGCATCACTCTCACAGCAAATTCCAATTGGTGCTTTGGCTTCTGCTCTTGCTAATGCTTCTCCAGAGCAGCAGAGAACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAGCAGTTGGAGCCTGATAATGCTGCCAAAGTGACAGGCATGCTTCTGGAAATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCACCAGAGGCCCTGAAAGCGAAGGTGGCTGAGGCAATGGACGTCCTTAGGAATGTTGCACAGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGCTGGCTTCATTATCACTTAATGACAGCCTATCTTAA 1647 0.4584 MYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDASGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERETAIDKAKFNNVFVKNLSESTTDDELKNIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQKFEQSMKEAADKYQGANLYVKNLDDSIGDDKLKELFSPYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPQAVAPRVPMYHPPGGPGIGQQIFYGQGPHAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFMPMVQQGQQGQRPGGRRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPMRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDSLS. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04518 548 SMART rrm2_1 107 179 IPR003954 GO:0003676
Seca11g04518 548 SMART rrm2_1 16 88 IPR003954 GO:0003676
Seca11g04518 548 SMART rrm2_1 210 282 IPR003954 GO:0003676
Seca11g04518 548 CDD RRM3_I_PABPs 105 184 - -
Seca11g04518 548 SUPERFAMILY PABC (PABP) domain 391 543 IPR036053 GO:0003723
Seca11g04518 548 Gene3D - 97 190 IPR012677 -
Seca11g04518 548 CDD RRM2_I_PABPs 13 89 IPR045305 -
Seca11g04518 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Seca11g04518 548 Coils Coil 181 205 - -
Seca11g04518 548 FunFam Polyadenylate-binding protein 9 96 - -
Seca11g04518 548 SMART poly_2 462 525 IPR002004 GO:0003723
Seca11g04518 548 FunFam Polyadenylate-binding protein 446 528 - -
Seca11g04518 548 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 1 523 IPR006515 GO:0003723
Seca11g04518 548 PANTHER RNA BINDING PROTEIN 12 318 - -
Seca11g04518 548 Pfam Poly-adenylate binding protein, unique domain 458 522 IPR002004 GO:0003723
Seca11g04518 548 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 450 527 IPR002004 GO:0003723
Seca11g04518 548 SUPERFAMILY RNA-binding domain, RBD 4 96 IPR035979 GO:0003676
Seca11g04518 548 SUPERFAMILY RNA-binding domain, RBD 106 290 IPR035979 GO:0003676
Seca11g04518 548 FunFam Polyadenylate-binding protein 97 191 - -
Seca11g04518 548 Gene3D - 446 529 - -
Seca11g04518 548 MobiDBLite consensus disorder prediction 372 391 - -
Seca11g04518 548 SMART rrm1_1 210 282 IPR000504 GO:0003723
Seca11g04518 548 SMART rrm1_1 107 179 IPR000504 GO:0003723
Seca11g04518 548 SMART rrm1_1 16 88 IPR000504 GO:0003723
Seca11g04518 548 Gene3D - 4 96 IPR012677 -
Seca11g04518 548 FunFam Polyadenylate-binding protein 192 297 - -
Seca11g04518 548 Gene3D - 191 295 IPR012677 -
Seca11g04518 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Seca11g04518 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Seca11g04518 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Seca11g04518 548 CDD RRM4_I_PABPs 208 286 - -
Seca11g04518 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 87 IPR000504 GO:0003723
Seca11g04518 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04518 Seca-Chr11 128484588 128489713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04518 1 547 Eukaryotic Initiation Factors Gene Family AT1G49760 76.344 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04518 K13126 - gmx:100813735 967.992