Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04508 TTAACTCAGAGGTGTTTGGATCCATCAGGGTATGGAAACTTCTCTACCATTCATTCTGCCATTGATTTAGTACCTTCCAACAATAAGTATTGGGTTTCCATCAAGGTGAAGGCAGGAACCTACAGGGAAAAAGTGAACATTCCTGTTGATAATCCTTACATCATACTAAAAGGAGAGGGAAAGAGGAAAACTCTTGTTGATTGGGATGACCATGATACAACCTCACAGAGCCCTACCTTCTCAATCATGGGAGATAATATTATTGTCAAATGCATGAGCTTTAATTAG 288 0.3924 LTQRCLDPSGYGNFSTIHSAIDLVPSNNKYWVSIKVKAGTYREKVNIPVDNPYIILKGEGKRKTLVDWDDHDTTSQSPTFSIMGDNIIVKCMSFN. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04508 95 Gene3D - 3 95 IPR012334 -
Seca11g04508 95 SUPERFAMILY Pectin lyase-like 7 94 IPR011050 -
Seca11g04508 95 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 95 - -
Seca11g04508 95 Pfam Pectinesterase 9 94 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04508 Seca-Chr11 128310484 128311013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04508 6 94 Carbohydrate Esterase AT2G19150 38.202 2.51e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04508 - - gmx:100819252 151.754