Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04495 ATGGGAACCAAATCCCTTTCTTTCTCATTCTTAGCTTTCACTTTCTTGCTTGCTGTTACTTCCCAAGAGCTAGCAGGTTCAGAAAGGGAAGCATTAGAGCTATCAGGATCAGAAAAAAGAGAAACACTAGAAATCATCATTGGTGGTGGTGGTGGTTCACCTGCTCCTTCCCCTGCTGAATGCCCTCCTCCACCACCTCCACCGTGTCCTCCACCACCACCAAAACCACTCTCCCGATTAGAGAAAGCACGCCGCGTGCTTCTCAAATTCAAAACCCTCATCGATGACCCAAAAGGCTACACTCGAAACTGGAACGAACACACCACCGACACGTGTAAATTCAACGGGATACGATGCGCCACGTACCCAAACTCAAACGAAAAAGCTGTTGCTGGGTTGGATTTCAACACAGCTCGTCTCTCAGGTAAAAACGGCACCGTTTTGTCCCTCACCGGGATCTTAGACAGCATACCGGAATTAACATTCTTCCACGTCAACTCTAACAACTTCTCTGGTGCTATCCCAACTCAAATCACGAAATTCCCCTTTTTCTACGAATTGGACCTCAGTAACAACAAACTCGTTGGTGAGTTTCCAAAAGACGTGCTTCAATCCAAACAATTAGTCTTCTTGGACCTAAGGTTTAACAAACTCTACGGTCCAATTCCACCACAACTCTTTCAGATGGATCTAGATGTGATTTTCATCAACGACAATAGTTTCAACCAATATCTCCCTGAGAATTTCGGATCCACCCCTGCAAGGTACCTCACTTTCGCGCGTAACCAACTCACCGGTCCAATCCCAAGGAGTATTGGGAACGCTTCAAAAACCCTAACCGAAGTGCTTTTTCTAGATAACAGATTTGAAGGGTGCTTGCCTTATGAAATTGGGTGCCTTAAGAAGGCTGTTGTATTTGATGTGAGTAAGAATTTTCTAACTGGTCCAATTCCGTACTCATTTGCCTGTTTAGAGAAGATTCAGTTCCTGAATTTGGCGGATAACAAATTCTATGGCCCTGTTCCGGAGAGTGTTTGTTTGCTTCCAGGGATACGGAACAATGGGAACTTGTCTTTGGCGAATAACTATTTCACTGAACTTGGACCTGCGTGTTGGAAGTTGATAAAGTCTAATGTGCTTAATGTGACCAGTAATTGTATCCCTGGGCTTCCTAATCAGAAATCACGCAAAGAATGCTATGATTTTCTTTACCATGTGAAGCCTTGCCCGAATCATGAGTTTTTGACTTACGTTCCTTGTAACCAAAGACTCGCTAACATCTTCCCAATTATACAAACCTTCAAAAAATCAATCACCTCAGACCCTTTGGGCGTAACCGCCACATGGGTTGGTCCAAACATTTGTAACTACACAGGCTTCTACTGTGACAACCCACCAGATAATCTAACCGCCATAACCGTCGCCTCCATAGATTTCAACGGTTTTCAGCTCGCATCCCCAACACTAGACGGTTTCATCGATCAACTCCCTGATTTAGCACTTTTCCATGCTAACACCAACAATTTCTCAGGCACCATTTCACCCAAAATCGCAGGACTCAAGTATTTATACGAACTCGATGTAAGTAACAACCTTCTCTCTGGAACATTCCCCACCTCACTCCTCAACATGCCTACTTTGTCCTTTTTGGACATTCGGTACAATTCCTTCACTGGCACTGTGCCTCCACAAATTTTCATGCAAACATTGGATGTGCTTTTCCTCAACAACAACAACTTCATGTTGACACTACCGAACAATTTAGGTGACACGTCAGCAGCTTATCTCACTCTTGCAAATAACAAATTCACCGGTCCCATTCCACGTGGCATTGGAAAGGCCTCGTCCACGTTGATTGAAGTGTTGTTCCTCAACAACCTCTTAACGGGTTGTCTTCCTTACGAAATTGGGTTCCTTAGAAATTTAACGGTTTTTGACGCCGGTGGTAACCGCTTGACGGGGCCGTTACCGTGCTCGTTTGGGTGTTTGAAGAAGGTGGAACAGCTTAACCTTGCTAGGAACATGTTGTACGGTCAGGTTCCGGAAGTGGTGTGTGCGTTGGGGAATTTGGCGAATTTGTCTTTGGCTTATAATTACTTTACGAGAGTGGGGCCGTTGTGTAGGAAGCTGATTAGAAGTGGGGTTCTTGATGTGAGGAAGAATTGTATTTTTGGTCTTCCGGATCAGAGGACGGTACAGGAGTGTGTGGCGTTTTTCTTGCTTCCAAGATCTTGTTTGCGACCTGCGTCGTTTAATATCATACCGTGTGAGGTTCCGAGTTTGAGGAAGGATTTGGGGAGAAATAAGAGGCATTTGCTGTCATATTCTGCTCTTTCTAGAAATAGAGCAGTTTTGTAA 2358 0.4461 MGTKSLSFSFLAFTFLLAVTSQELAGSEREALELSGSEKRETLEIIIGGGGGSPAPSPAECPPPPPPPCPPPPPKPLSRLEKARRVLLKFKTLIDDPKGYTRNWNEHTTDTCKFNGIRCATYPNSNEKAVAGLDFNTARLSGKNGTVLSLTGILDSIPELTFFHVNSNNFSGAIPTQITKFPFFYELDLSNNKLVGEFPKDVLQSKQLVFLDLRFNKLYGPIPPQLFQMDLDVIFINDNSFNQYLPENFGSTPARYLTFARNQLTGPIPRSIGNASKTLTEVLFLDNRFEGCLPYEIGCLKKAVVFDVSKNFLTGPIPYSFACLEKIQFLNLADNKFYGPVPESVCLLPGIRNNGNLSLANNYFTELGPACWKLIKSNVLNVTSNCIPGLPNQKSRKECYDFLYHVKPCPNHEFLTYVPCNQRLANIFPIIQTFKKSITSDPLGVTATWVGPNICNYTGFYCDNPPDNLTAITVASIDFNGFQLASPTLDGFIDQLPDLALFHANTNNFSGTISPKIAGLKYLYELDVSNNLLSGTFPTSLLNMPTLSFLDIRYNSFTGTVPPQIFMQTLDVLFLNNNNFMLTLPNNLGDTSAAYLTLANNKFTGPIPRGIGKASSTLIEVLFLNNLLTGCLPYEIGFLRNLTVFDAGGNRLTGPLPCSFGCLKKVEQLNLARNMLYGQVPEVVCALGNLANLSLAYNYFTRVGPLCRKLIRSGVLDVRKNCIFGLPDQRTVQECVAFFLLPRSCLRPASFNIIPCEVPSLRKDLGRNKRHLLSYSALSRNRAVL. 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04495 785 Gene3D Ribonuclease Inhibitor 254 406 IPR032675 -
Seca11g04495 785 Gene3D Ribonuclease Inhibitor 595 737 IPR032675 -
Seca11g04495 785 Gene3D Ribonuclease Inhibitor 80 253 IPR032675 -
Seca11g04495 785 Pfam Leucine rich repeat N-terminal domain 83 119 IPR013210 -
Seca11g04495 785 Pfam Leucine rich repeat N-terminal domain 432 463 IPR013210 -
Seca11g04495 785 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 466 714 - -
Seca11g04495 785 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 126 398 - -
Seca11g04495 785 Gene3D Ribonuclease Inhibitor 430 589 IPR032675 -
Seca11g04495 785 MobiDBLite consensus disorder prediction 46 77 - -
Seca11g04495 785 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 420 758 - -
Seca11g04495 785 MobiDBLite consensus disorder prediction 56 77 - -
Seca11g04495 785 SUPERFAMILY L domain-like 436 725 - -
Seca11g04495 785 SUPERFAMILY L domain-like 82 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04495 Seca-Chr11 128099936 128105850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04495 421 742 Leucine-rich Repeat extension Gene Families AT3G24480 45.342 2.75e-89 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04495 - - gmx:100813314 612.068