Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04493 ATGAGGAAGCCTTGCTGTGATAGCAAAGAAATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAAAAACTCATAGATTATATCAAGAAACACGGCGACGTTTGTTGGCGTACACTCCCTCAAGCTGCAGGTTTACTTCGGTGCGGTAAAAGTTGTAGGCTTAGATGGATAAATTATCTACGGCCTGACCTTAAAAGGGGCAACTTTGATGAAGATGAAGAAGATCTCATCATCAAGCTCCATGCACTACTAGGAAACCGGTGGTCATTAATAGCTGGGAGATTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAACTCTCACATAAGAAGAAAGCTTATTAGTAAGGGTGTTGATCCAAATAATCACCCTTTAAGCCACAAACTCCCTTCCATTCAAAATCCAGAAAGTTCAAAATCCTTTGGCTTGAAAGACATTAGCAAGAATGAGACAAGTAAAACCCAAATTGAGTACAATTATGGTGAAGTCTCAGATGCTGCGAGTGGCGAGGATGAGTCATATACCTTACCGGATTTGAACCTTGATCTCACTATGAGCATTCCTTCACCTTCAACAAGTATTGCTGAAAAAAATCTAAAACCAATTATTCGTGAAACCAAATCGTCAAGGAAACTGCATTTTGCTTCCCCTTCAACACTTCTTCTATTTCAATAA 681 0.3994 MRKPCCDSKEMNKGAWSKQEDQKLIDYIKKHGDVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFDEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGVDPNNHPLSHKLPSIQNPESSKSFGLKDISKNETSKTQIEYNYGEVSDAASGEDESYTLPDLNLDLTMSIPSPSTSIAEKNLKPIIRETKSSRKLHFASPSTLLLFQ. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04493 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Seca11g04493 226 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca11g04493 226 MobiDBLite consensus disorder prediction 128 148 - -
Seca11g04493 226 MobiDBLite consensus disorder prediction 125 148 - -
Seca11g04493 226 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca11g04493 226 Gene3D - 67 157 - -
Seca11g04493 226 SMART sant 12 62 IPR001005 -
Seca11g04493 226 SMART sant 65 113 IPR001005 -
Seca11g04493 226 CDD SANT 68 111 IPR001005 -
Seca11g04493 226 CDD SANT 15 60 IPR001005 -
Seca11g04493 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 156 - -
Seca11g04493 226 FunFam MYB-related transcription factor 12 65 - -
Seca11g04493 226 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Seca11g04493 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Seca11g04493 226 FunFam MYB transcription factor 67 127 - -
Seca11g04493 226 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Seca11g04493 226 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Seca11g04493 226 Gene3D - 5 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04493 Seca-Chr11 127909325 127911458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04493 2 190 MYB Transcription Factor Family AT4G38620 54.545 2.71e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g04493 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04493 K09422 - gmx:100814923 353.984