Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04492 ATGGCCGGCGAGTTCGCCGGAGACCGCACGCCGGAGCTTCTTTCTCTGGTTCACGACATCGCCGGAATGTGCGCAGGCGGTGGTTCATCCTCCGCCACCGCCGACGCCACTTTTAGGAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACACACTTGTTCGAGGAGATTAGGGAACTGAACAAGGATGTCGGTTCTGCTTCGAGTTCTTCTTCCGCTACTGATTCTGCTTCTTCTGCGGCTTCGTGGTCCTCTGATCTGGTTCTCGCTCTTAATTCTGCGAAGCGCTTGCTCTCTGTTGCTAAGAACTTCCGTTCCAATTGTTCTTCTGATGGAGCTGCCAAGACAATTGTCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAAAAACTATTAAGCAACTTGCCATATGATGATTTAGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTTAGAACACAATTGAGAAGAGCGGCAGAAAAATATGGGTTTATGATTTCAAAAATGCCATCTTATGAATTATCCCAGTCCCTAGCTCAAGAAATTAGTCAGGTTCTTGGCAAACCTGCAAATGGATTGCAGAAACAAAACAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTCCTGTAAACAATGGAAGGAAAAGTTGCAGCACGACTGGGGCTGGATCTCGCTTGGAAAGAACAAGGAGCATTCCCACCTCTTCTGAGGTTTCCTTATCGAATGTAACTGAGCCTGAAAATAAAGAAATTTCTGAGAGAAAGAGTCTATCTGAGGTTAAAAAGACTGAAGCAATTGTAATTCCTGAAGATTTCCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATCGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATGTAACTTGTCCAAAAACTCAGCAGAAGCTCCAGCATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTACTCAGTGGTGTATAGACCACAACATTGAGCAGCCAACGGGACTAACTAATGGCAAAATAAAAAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATAGCAGCAATCGAAACTCTGGTCCGGAAGCTCTCCAGCCGATCCATTGAGGAGCGTAGAGCTGCTGTTGCTGAAATTCGATCACTATCAAAACGAAGCACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTTTAACATCAGAAGATGTATTGACGCAAGACAATGCAGTTACTGCAATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCTATTCCCTCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCTGCAGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGTGCCTCAGGAGCTATACCCGCATTGGTAGAATTACTCCAAAATGGGAGCCCTAGAGGAAAGAAGGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGGAACAAAGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCTATTGTAAAAGCCAGCACTATTCCAGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCATTGTGCAAGAGGGATGCTGACAATCTTGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTTTCTGACCTTGCTCGAAGTGGTACAGAGAGGGCCAAACGAAAGGCTACCTCATTATTGGAGCATCTTCGTAAGTTACAGCAGCTCTGA 1959 0.4431 MAGEFAGDRTPELLSLVHDIAGMCAGGGSSSATADATFRKDCTDLVRRISLLTHLFEEIRELNKDVGSASSSSSATDSASSAASWSSDLVLALNSAKRLLSVAKNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDDLDISEEVKEQVDLVRTQLRRAAEKYGFMISKMPSYELSQSLAQEISQVLGKPANGLQKQNSCPENLSELDSIPVNNGRKSCSTTGAGSRLERTRSIPTSSEVSLSNVTEPENKEISERKSLSEVKKTEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLQHLTLTPNYVLRSLITQWCIDHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIETLVRKLSSRSIEERRAAVAEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTAILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSDLARSGTERAKRKATSLLEHLRKLQQL. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04492 652 Coils Coil 632 652 - -
Seca11g04492 652 FunFam RING-type E3 ubiquitin transferase 272 347 - -
Seca11g04492 652 Coils Coil 145 165 - -
Seca11g04492 652 FunFam RING-type E3 ubiquitin transferase 552 651 - -
Seca11g04492 652 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Seca11g04492 652 Gene3D - 568 647 IPR011989 -
Seca11g04492 652 Pfam Armadillo/beta-catenin-like repeat 485 523 IPR000225 GO:0005515
Seca11g04492 652 Pfam Armadillo/beta-catenin-like repeat 403 441 IPR000225 GO:0005515
Seca11g04492 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515
Seca11g04492 652 PANTHER U BOX DOMAIN-CONTAINING 39 648 - -
Seca11g04492 652 SUPERFAMILY RING/U-box 271 347 - -
Seca11g04492 652 MobiDBLite consensus disorder prediction 218 260 - -
Seca11g04492 652 FunFam RING-type E3 ubiquitin transferase 351 551 - -
Seca11g04492 652 Gene3D - 351 567 IPR011989 -
Seca11g04492 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515
Seca11g04492 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515
Seca11g04492 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Seca11g04492 652 CDD RING-Ubox_PUB 274 326 IPR045210 -
Seca11g04492 652 SUPERFAMILY ARM repeat 372 646 IPR016024 -
Seca11g04492 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Seca11g04492 652 Pfam U-box domain 273 343 IPR003613 GO:0004842|GO:0016567
Seca11g04492 652 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Seca11g04492 652 SMART arm_5 402 442 IPR000225 GO:0005515
Seca11g04492 652 SMART arm_5 566 606 IPR000225 GO:0005515
Seca11g04492 652 SMART arm_5 484 524 IPR000225 GO:0005515
Seca11g04492 652 SMART arm_5 525 565 IPR000225 GO:0005515
Seca11g04492 652 SMART arm_5 443 483 IPR000225 GO:0005515
Seca11g04492 652 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04492 Seca-Chr11 127834669 127843074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04492 13 651 U-box Gene Family AT1G23030 61.669 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04492 - - gmx:100811123 1070.84