Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04481 ATGGCTGGTCCTTTCGATATGATAAGCAATATTTTTCCTGGAAGAGACACTTGGAGGCTCAAGGTTCCCATTGGCCGCTTATGGAATATGACTCCAATTGATGACCCTGTCAAACCTTTTTCTGTGCAAATGATCCTCGTGGATGCAGAGGGTGGTAGAATCCAGGCTGGCATCAAAAAGCATTTGATGAGGAAATTTGCAAATTTATTGGTTGAAGGTGCTGTGTACAAGATGGCTTATTTCGAAGTAGTTAGAAACCTTGGTTCATATCGAGCCACAGAGCATGAGTTTCGTCTATTCTTTGATTCGAGAACCAGGGTTGTGCCAACTGAGAGTGAACTCATTCCAAGGTTTGGCTTCTCTTTGAAGAACACACAAGATGTGGTGGACACGAAGGGCAAATCAGATTACTTGATGGATTTTATGGGGGTGTTGTTGGCTGTCTCAAATGAGAAGCGTATAATGAAGGAAGGCAAGCTAACGAGGGTTATTGTTCTTGAACTTGCTGATGAGAAGGGAAGGATAAGATGTTCTCTTTTTGGTGATTTTGTTGATATGGTCACAAACTTCCTGTCCGAGGGGAAGAATGAGCTTCCCATAATCATAATACAACTTGCAAGGGTCTCATCTTACAAGGGTTCAATTGTTTTACAAAATGTGATGAATGCCACAAAACTTTTCTGGAACCCACAAATACCTGAGGCTGTTGATTTTAAAAATGGAATCTCTTCGAATGACATTGATATCGATGTATCTGTTGGTTTAATTGAGGATAACACCCGAGTTATGTCATTGAAAGAGGAATTTCTTGATGCATACCCGAGGAAAACTATTAGTCAGCTACAATATATATTGGAGGAGGGCATGTACATTGTTAGTGGAACTGTTGAAAGAGTTTCTGAGGAAGGGCTTTGGTGGTATATGGGCGGTAAGTGTCAAAGGTCCGTCATTCAGGATGCAGGTGGTTTCTACTGTTCCTGGTGCGAGACAATTGTCTACGAAGTGACTCCAAGGTACAAGCTGCTTTTAGAAGTTAATGACGGGCAGGAGAAAGCCAATTTCATGATCTTTGACACTGATGTCTACAGTGTACTTCAGATCAGCTGCAAGGACCTTATGTCTGGAATGAAGGTTTTCTTATTAATCTTATTTTTCTTCCTTAACCATAAAGCACGTCGTCCAATAGTGTTAACTTCATAA 1200 0.41 MAGPFDMISNIFPGRDTWRLKVPIGRLWNMTPIDDPVKPFSVQMILVDAEGGRIQAGIKKHLMRKFANLLVEGAVYKMAYFEVVRNLGSYRATEHEFRLFFDSRTRVVPTESELIPRFGFSLKNTQDVVDTKGKSDYLMDFMGVLLAVSNEKRIMKEGKLTRVIVLELADEKGRIRCSLFGDFVDMVTNFLSEGKNELPIIIIQLARVSSYKGSIVLQNVMNATKLFWNPQIPEAVDFKNGISSNDIDIDVSVGLIEDNTRVMSLKEEFLDAYPRKTISQLQYILEEGMYIVSGTVERVSEEGLWWYMGGKCQRSVIQDAGGFYCSWCETIVYEVTPRYKLLLEVNDGQEKANFMIFDTDVYSVLQISCKDLMSGMKVFLLILFFFLNHKARRPIVLTS. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04481 399 Gene3D - 266 379 IPR012340 -
Seca11g04481 399 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
Seca11g04481 399 SUPERFAMILY Nucleic acid-binding proteins 273 375 IPR012340 -
Seca11g04481 399 CDD RPA1_DBD_B_like 140 239 - -
Seca11g04481 399 CDD RPA1_DBD_A_like 19 107 - -
Seca11g04481 399 Gene3D - 115 250 IPR012340 -
Seca11g04481 399 Pfam Domain of unknown function DUF223 44 111 IPR003871 -
Seca11g04481 399 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
Seca11g04481 399 Gene3D - 4 109 IPR012340 -
Seca11g04481 399 PANTHER OS03G0429900 PROTEIN 7 362 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04481 Seca-Chr11 127650844 127654635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04481 8 372 Core DNA Replication Machinery Family AT5G45400 22.762 1.71e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04481 - - lja:Lj6g3v0884310.1 366.696