Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04480 ATGGATGCTTATAGAGGTGAAGGGTCATCGTCATCGTCATCTTCATCTTACTACACCATTCTTGGTGTTAGTTCTGATTCTTCCCTAGAAGAAATTCGGCGTGCTTACAGGAAGCTTGCTATGCAGCAATGGCATCCTGATAGGTGGACAAAATCACCTTCTTTACTGGGTGATGCCAAGCTCAAGTTCCAGCAAATTCAAGAAGCCTATTCAGTGCTATCTGACCCCAAGAAAAGAACCATGTACGATGCTGGCTTGTATGATCCTCAAGAGGAAGAGGATGAGGGCTTTTCAGATTTTGTGGGAGAAATGGTGTCCCTTATGGATCAAGTGAGGAGAGAGGTATGGTTCTTGAGTCTTGACCACCTTCTATAA 375 0.4427 MDAYRGEGSSSSSSSSYYTILGVSSDSSLEEIRRAYRKLAMQQWHPDRWTKSPSLLGDAKLKFQQIQEAYSVLSDPKKRTMYDAGLYDPQEEEDEGFSDFVGEMVSLMDQVRREVWFLSLDHLL. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04480 124 SMART dnaj_3 15 78 IPR001623 -
Seca11g04480 124 Pfam DnaJ domain 17 83 IPR001623 -
Seca11g04480 124 SUPERFAMILY Chaperone J-domain 13 90 IPR036869 -
Seca11g04480 124 CDD DnaJ 17 75 IPR001623 -
Seca11g04480 124 Gene3D DnaJ domain 3 103 IPR036869 -
Seca11g04480 124 ProSiteProfiles dnaJ domain profile. 16 86 IPR001623 -
Seca11g04480 124 PANTHER PUTATIVE, EXPRESSED-RELATED 10 113 - -
Seca11g04480 124 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Seca11g04480 124 PRINTS DnaJ domain signature 37 52 IPR001623 -
Seca11g04480 124 PRINTS DnaJ domain signature 58 78 IPR001623 -
Seca11g04480 124 PRINTS DnaJ domain signature 18 36 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04480 Seca-Chr11 127632827 127633639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04480 9 84 C2H2 Transcription Factor Family AT1G74250 46.753 1.81e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04480 - - lja:Lj0g3v0084989.1 179.104